NONHSAT005972
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005972 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1805 nt |
Genomic location |
chr1-:146032648..146215986 |
Exon number |
3 |
Exons |
146032648..146033754,146214665..146215318,146215943..146215986 |
Genome context |
|
Sequence |
000001 ggaagaaaag aaggggaaga agaTCAAAAC CCACCATGCC CCAGGCTCAA CAGCGTGCTG ATGGAAGTGG AAGAGCCTGA 000080
000081 AGTCTTGCAG GACTCACTGG ATAGATGTTA TTCGACTCCA TCAATGTACT TTGAACTACC TGACTCATTC CAGCACTACA 000160 000161 GAAGTGTGTT TTACTCATTT GAGGAACAGC ACATCAGCTT TGCCCTTGAC ATGGACAATA GGTTTTTTAC TTTGACGGTG 000240 000241 ACAAGTCTCC ACCTGGTCTT CCAGATGGGA GTCATATTCC CACAATAAGC AGCCCTTACT AAGCCGAGAG GTGTCATTCC 000320 000321 TGCAGGCAGG ACCTATAGGC ACCTGAAGAT TTGAATGAAA CTATAGTTCC ATTTGGAAGC CCAGACATAG GATGGGTCAG 000400 000401 TGGGCATGGC TCTATTCCTA TTCTCAGAGC ATGCCAGTGG CAACCTGTGC TCCGTCTGAA GACAATGGAC CCACGTTAGG 000480 000481 TGTGACACGT TCACATAACT GTGCAGCACA TGCCGGGAGT GATCAGCCGG ACATTTTAAT TTGAACCATG TATCTCTGGG 000560 000561 TAGCTACAAA ATTCCTCAGG GATTTCATTT TGCAGGCATG TCTCTGAGCT TCTATACCTA CTCAAGGTCA GTGTCATCTT 000640 000641 TGTGTTTAGT TCATCCAAAG GTGTTACCCT GGTTTCAATG AACCTAACCT CATTATTTGT GTCTTCAGTG TTGGCTTGTT 000720 000721 TTAGCTGATC CATCTGTAAC ACAGGAGGGA TCCTTGGCTG AGGATTGTAT TTCAGAACCA CCAACTGCTC TTGACAATTG 000800 000801 TTAACCCGCT AGGCTCCTTT GGTTAGAGAA GCCACAGTCC TTCAGCCTCC AATTGGTGTC AGTACTTAGG AAGACCACAG 000880 000881 CTAGATGGAC AAACAGCATT GGGAGGCCTT AGCCCTGCTC CTCTCAATTC CATCCTGTAG AGAACAGGAG TCAGGAGCCG 000960 000961 CTGGCAGGAG ACAGCATGTC ACCCAGGACT CTGCCGGTGC AGAATATGAG CAATGCCAtg ttcttgcaga aaacgcttag 001040 001041 cctgagtttc ataggaggta atcaccagac aactgcagaa tgtagaacac tgagcaggac aactgacctg tctccttcac 001120 001121 atagtccata tcaccacaaa tcacacaaca aaaaggagaa gagatatttt gggttgaaaa aaagtaaaaa gataATGTAG 001200 001201 CTGCAtttct ttagttattt tgaaccccaa atatttcctc atctttttgt tgttgtcatg gatggtggtg acatggactt 001280 001281 gtttatagag gacaggtcag ctgtctggct caatgatcta cattctgaag ttgtctgaaa atgtcttcat gattaaattc 001360 001361 agcctaaact ttttgacggg aacactgcag agacaatgct gtgagtttcc aacctcagcc catctgcggg cagagaaggt 001440 001441 ctagtttgtc caacaccatt atgatatcag gactggttac ttggttaagg aggggtctag gagatctgtc ccttttagag 001520 001521 acaccttact tataatgaag tacttgggaa agtggttttc aagagtataa atatcctgta ttctaatgat catcctctaa 001600 001601 acattttatc atttattaat cctccctgcc tgtgtctatt attaTATTCA TATCTCTACG CTGCAAATTT TGGGTCTCAA 001680 001681 TTTTTACTGT GCCTTTGTTT TTACTAGTGT CTGCTGTTGC AAAAAGAAGA AAACATTCTT TGCCTGAGTT TTAATTTTTG 001760 001761 TCCAAAGTTA ATTTTAATCT ATACAATTAA AACCTTTTGC CTATC |
Predicted Small Protein
Name | NONHSAT005972_smProtein_884:1039 |
Length | 52 |
Molecular weight | 5636.1479 |
Aromaticity | 0.0392156862745 |
Instability index | 56.4431372549 |
Isoelectric point | 5.07733154297 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0462423207522 |
Amino acid sequence | MDKQHWEALALLLSIPSCREQESGAAGRRQHVTQDSAGAEYEQCHVLAENA |
Secondary structure | LLHHHHHHHHHHHLLLLLHHHHLLLLLLEEEEEELLHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |