NONHSAT005972

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005972

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1805 nt

Genomic location

chr1-:146032648..146215986

Exon number

3

Exons

146032648..146033754,146214665..146215318,146215943..146215986

Genome context

Sequence
000001 ggaagaaaag aaggggaaga agaTCAAAAC CCACCATGCC CCAGGCTCAA CAGCGTGCTG ATGGAAGTGG AAGAGCCTGA 000080
000081 AGTCTTGCAG GACTCACTGG ATAGATGTTA TTCGACTCCA TCAATGTACT TTGAACTACC TGACTCATTC CAGCACTACA 000160
000161 GAAGTGTGTT TTACTCATTT GAGGAACAGC ACATCAGCTT TGCCCTTGAC ATGGACAATA GGTTTTTTAC TTTGACGGTG 000240
000241 ACAAGTCTCC ACCTGGTCTT CCAGATGGGA GTCATATTCC CACAATAAGC AGCCCTTACT AAGCCGAGAG GTGTCATTCC 000320
000321 TGCAGGCAGG ACCTATAGGC ACCTGAAGAT TTGAATGAAA CTATAGTTCC ATTTGGAAGC CCAGACATAG GATGGGTCAG 000400
000401 TGGGCATGGC TCTATTCCTA TTCTCAGAGC ATGCCAGTGG CAACCTGTGC TCCGTCTGAA GACAATGGAC CCACGTTAGG 000480
000481 TGTGACACGT TCACATAACT GTGCAGCACA TGCCGGGAGT GATCAGCCGG ACATTTTAAT TTGAACCATG TATCTCTGGG 000560
000561 TAGCTACAAA ATTCCTCAGG GATTTCATTT TGCAGGCATG TCTCTGAGCT TCTATACCTA CTCAAGGTCA GTGTCATCTT 000640
000641 TGTGTTTAGT TCATCCAAAG GTGTTACCCT GGTTTCAATG AACCTAACCT CATTATTTGT GTCTTCAGTG TTGGCTTGTT 000720
000721 TTAGCTGATC CATCTGTAAC ACAGGAGGGA TCCTTGGCTG AGGATTGTAT TTCAGAACCA CCAACTGCTC TTGACAATTG 000800
000801 TTAACCCGCT AGGCTCCTTT GGTTAGAGAA GCCACAGTCC TTCAGCCTCC AATTGGTGTC AGTACTTAGG AAGACCACAG 000880
000881 CTAGATGGAC AAACAGCATT GGGAGGCCTT AGCCCTGCTC CTCTCAATTC CATCCTGTAG AGAACAGGAG TCAGGAGCCG 000960
000961 CTGGCAGGAG ACAGCATGTC ACCCAGGACT CTGCCGGTGC AGAATATGAG CAATGCCAtg ttcttgcaga aaacgcttag 001040
001041 cctgagtttc ataggaggta atcaccagac aactgcagaa tgtagaacac tgagcaggac aactgacctg tctccttcac 001120
001121 atagtccata tcaccacaaa tcacacaaca aaaaggagaa gagatatttt gggttgaaaa aaagtaaaaa gataATGTAG 001200
001201 CTGCAtttct ttagttattt tgaaccccaa atatttcctc atctttttgt tgttgtcatg gatggtggtg acatggactt 001280
001281 gtttatagag gacaggtcag ctgtctggct caatgatcta cattctgaag ttgtctgaaa atgtcttcat gattaaattc 001360
001361 agcctaaact ttttgacggg aacactgcag agacaatgct gtgagtttcc aacctcagcc catctgcggg cagagaaggt 001440
001441 ctagtttgtc caacaccatt atgatatcag gactggttac ttggttaagg aggggtctag gagatctgtc ccttttagag 001520
001521 acaccttact tataatgaag tacttgggaa agtggttttc aagagtataa atatcctgta ttctaatgat catcctctaa 001600
001601 acattttatc atttattaat cctccctgcc tgtgtctatt attaTATTCA TATCTCTACG CTGCAAATTT TGGGTCTCAA 001680
001681 TTTTTACTGT GCCTTTGTTT TTACTAGTGT CTGCTGTTGC AAAAAGAAGA AAACATTCTT TGCCTGAGTT TTAATTTTTG 001760
001761 TCCAAAGTTA ATTTTAATCT ATACAATTAA AACCTTTTGC CTATC
[back to top]

Predicted Small Protein

Name NONHSAT005972_smProtein_884:1039
Length 52
Molecular weight 5636.1479
Aromaticity 0.0392156862745
Instability index 56.4431372549
Isoelectric point 5.07733154297
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0462423207522
Amino acid sequence MDKQHWEALALLLSIPSCREQESGAAGRRQHVTQDSAGAEYEQCHVLAENA
Secondary structure LLHHHHHHHHHHHLLLLLHHHHLLLLLLEEEEEELLHHHHHHHHHHHHLLL
PRMN -
PiMo -