NONHSAT006172
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006172 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1613 nt |
Genomic location |
chr1+:149230538..149232583 |
Exon number |
4 |
Exons |
149230538..149230773,149230786..149230948,149231281..149231449,149231539..149232583 |
Genome context |
|
Sequence |
000001 CAATGCGTGA ATGCTTTAAA AGTTGCAATC Agcgtccctg gatgggctcg aaccaccaac ctttcggtta acagccgaac 000080
000081 gcgctaaccc attgcgccac agagacAAGC ACTACCAGTT CTAATAGGCA ATATAGGAAG GGCACACTCA CTAAACTTCC 000160 000161 TCCGTCCCTT CTATTCTCAG CGCCCGCCTG GCAGGACGAC TGAGCAAGGC TTTGGAAAAC CAGAGAGATT AGAGCGGGTC 000240 000241 ACATTGGATA CCTGCGCGTT AGGAGATTCT GGAGCCAGAC GGAGAGCCGA ATGGCCTTCG CCCGCCCTGC CCCTCTCTTG 000320 000321 CTTCAGAAGC CCCCAGAAAC TCCGCGGTCG GCGACCCAGC CCGAGCCGCC TGAGGTCCCA AGGGGAAGCT GAACGCCTGC 000400 000401 ATTGATTTCT CGGCACCCCG CGGGGCGTGC AACTGGCAGG GCCTCTGGTG GGCTTTCTGC CGGGTGGAGC TGCGGGGGCT 000480 000481 CAGCTGGGCG GGGGTCGGTT CCTGGGGCCG TAGGGTGGGA GCGGGGGAAG GGAAAAGCAA AAGCTGGGAA AGAAGCCAGG 000560 000561 GAGACATGGC AGAATGGGGA AATGGAGAGA GAACCTGAAA GAGCCCCAAA CTCGAGGACC TATTGCTCCC CAAGAATAAC 000640 000641 ATCTTCCAGA ACTAGACAGA AACTAAGCGT CTGGAAACCC TGAAATCCTT GGAGGAGTAG CATCATCCTG ACCCTCTGTG 000720 000721 CTCCTTTTGG CAAAGGACTT GCTTCCATTG TTTGTTTGTT CAATTGTCTG TTTGTTAAAT AAATAAAACT CTTTTCATAT 000800 000801 ATCTTTAAAA Gtacgttggt tctattattt tatgattaca aacaatgctg cagtcatcat tcttctacac ttgtcattgg 000880 000881 ccactggtat atttccatag ggtggaggcc tggagagcag ttgttCCAGC ATAGTGCTTA CATAGatttt atttcattcc 000960 000961 gttttctttc ctttgttgct ttattagcta taaccctttt cttatttcag tggctgcttt agggtttctg ggatatgtct 001040 001041 ttaatttatc acagtctgct ttcaggtgtc attatgtctc cctttctggc ctttatccta gtgttatgta attttacttt 001120 001121 atacattata atccttgtga ttcattatta ttacttttat ttattacacc aaatattttt taaaagattt aaattctaag 001200 001201 aaaatgtgta gtacatgctt tctaaatgcc atttccagta ttcgtttctt tgtataggcc cacattttta tctggtatcc 001280 001281 ttttgcctct gcctggagga cttttaataa gatttcttgt aacgtgggtt ggtgaattgt tttagctttt gtatgttttt 001360 001361 cgatgtcctt atttcactca cagttttgaa attttatttt tgcatagaat tccaggttaa ctttttttct ctgGGTACTT 001440 001441 TAAAAATGTT ACCATTTATG AAGCATTGCC ATTATAATAT CATCTTTCTT TCCTGTGTTT GTAAGAATGG CATAAAGCCG 001520 001521 GTTTCTTGCG GTGGTTATAT AATTTTCAGA ATGTGTACtt aaatttaaaa tattaaattt tactaaaata ctaaaaatat 001600 001601 taatCATGAA CAT |
Predicted Small Protein
Name | NONHSAT006172_smProtein_1352:1561 |
Length | 70 |
Molecular weight | 8062.7964 |
Aromaticity | 0.188405797101 |
Instability index | 54.2407246377 |
Isoelectric point | 8.85003662109 |
Runs | 17 |
Runs residual | 0.107045487157 |
Runs probability | 0.0387013310889 |
Amino acid sequence | MFFDVLISLTVLKFYFCIEFQVNFFSLGTLKMLPFMKHCHYNIIFLSCVCKNGIKPVSCG GYIIFRMCT |
Secondary structure | LLEEEEEEELLLEEEEEEEEEELEELLLHHHHLHHHHHLLLLEEEEEEEELLLLEEEELL LEEEEEEEL |
PRMN | LLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL LLLLLLLLL |
PiMo | oooooTTTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooooo ooooooooo |