NONHSAT007001
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007001 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2520 nt |
Genomic location |
chr1-:159169452..159172599 |
Exon number |
2 |
Exons |
159169452..159171411,159172040..159172599 |
Genome context |
|
Sequence |
000001 GTGGTGCCCA AGGCCCTAAC CAGCGGCTGG AAGATTCACA ACTGTATTAC CTGAACTGAA GGGGGTGGGC AGGCCTGCTA 000080
000081 GATTGCAGCT GCCCCTTTTT GCATGCCCAT TGTCAGACCA GGGAGGAAAA GCTGGGGGAG GGTGGGAGCG ATGCCAAGGG 000160 000161 CATCCTGGAT CTGAGGCGGG GCAGTCCAGC CAGGACAGGG AGGACCAGGA ACCTCATCTC CACAGCAACC AGCTGGGGCC 000240 000241 ACGAGAAGGA AGACAGGAAA TCAAAAGGAA GGGTGGGGAC CCAGCCTTCA ACTCACTGGG TACAGACTAT GGGAAAAAAT 000320 000321 AGGTGGTGGT AGGTCTTTCC AGGGTCAACG CCAAGGAGAG GCCTGAGAGG TGCATAGCAA AGGCTGTGGC ACTGACTCCA 000400 000401 TGGCTCAGAG GAGGGAAATC CAGGGAAGGG CTGAATGCTC TGTGTTTAAG GGAGAGATAG AATGGACAGC TGGGCAAACA 000480 000481 CACACCCGGG GACTCCTTTC TCCAAGACCG ATGGGCATTG GGGGTGGCAG AGGAAATACC AGCATGGAAC AACATCCCAG 000560 000561 GGACCCGCGT CCTCCCCAGG TTACAGTCCT GGGTCCCTGC ATGGCTGCAT GTTGTCTGCA GGCCACATCT CCTCAGGACT 000640 000641 CCCGCACTCA TCACTTTCCC ATTGCTATGG AAGAGAGGTG TCAAGGTGGC ACCTGCCTCC CTGTCCGTAG TGCTCAGGTG 000720 000721 TGTGGCTACC AGAGGAAAAG CCACTCCCAA CCTTTGCCGA CAACCATCCC GTTTCTGGGT TCCTGGAGAA GTCTGGGAAG 000800 000801 CTGCTCTGTT GTAGAGGCTG AAAGGAGGGC TGGTGAGAGC CCCCAGCTGA AACCAGCCCT GCCCCTTACC CTTCCTCACC 000880 000881 CCTCTACCTT CACTCTCCTC CTAACACTCC AGGGTTTTGT TTTTTGTTTG TTTTTTGCTT TTCTCACCCC AGGGCTCCTG 000960 000961 CCTCTCCAGC CTGGAGACAG ATTTGATTTG GGATTGTTAC AAAAATAATA ATAACCCAAA TGCAGAGAAG CCACGGAAAG 001040 001041 GGCTGAGGGC AACCCTCCCC TCCCCCCGCC CTCCTCCCTC CCCATTCCAA ACCGAGTACA AAACCGCACC CAAAGCAGAC 001120 001121 ATTCTGTACA GGGGGGTGGG TGGGCTGGGG AGCAAGCGGG AGGGGCGGCC CTGCGGTTGC TCTGTACAAG TCCGGGTTGG 001200 001201 TGACGGCCCC AGCAGTCCCC ACAGGGCCCC TGGGGGGCGC AGGAAGTGGG CAGGCGCCTC TAGATGAAAT ATTCCTTCTT 001280 001281 GTCGTCCCCT CCTGACTGCC CGCCTTCTGC ATTGATGATG GCCGTGTCCG CGTCTGGAGC ATCGTCGGAG CCTTTTGCCT 001360 001361 CATGTGTCAG GTAGGTTCCT GTGTAGAGAC AGAGGCTTCT CCTCTCAGGA GCAGCTTCCC AACCTCTGAG TCCACCCTGC 001440 001441 CCACTTTCTC ACCCACCCAC TCACACACTG CTCAAGTAAT TTTTCTCTTG CCAATAGCTC TCTTCTACTC CACCTTACCT 001520 001521 AATTCGCATT TTGCTTCCAA CATGCCTCAC CTGACCACAC CCTTCATGAA TAATGAATCC TACCCCTAAG TAGAATCTCA 001600 001601 TCTATAATAC AAAGCAAGAA AGAGAAgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcttgcac gcatgcgtgt 001680 001681 gtgtgtgtat gcatgcgtgt gCACGCAACT TGGTGACGGG GGATCTGCTA TGTCAGCTTC ATGAGCAAAG CAATTGAGAT 001760 001761 CTGGCTTATG TATGACCAGC CTATGGAGTC AGGCCGCTGG CTAGAATTAA TAGCAGAGCA GGAAGTCTga gaggaaggaa 001840 001841 tgtgagaaga gggtagagag aaggcatgga tataagagag aaggtagaaa agggggagag gaaagaaagg caatgagatc 001920 001921 aaaggagaaa gaaaatgagg ttaaacagac agaaaggaag aaagCGCAGG AAGCAATGAG ATGGAGATGC AGTTTCAGGA 002000 002001 GCTCTCTGTC TTGCAGCAGG AGACCTGGAG GTAGAGCAGC ATGGGAGCAA CCGCTGACTG AGTGGGAAGG TTTGATTTCA 002080 002081 CTTGGACGAT CCCCAAGTGA TCAGGCTTTA CTGCGGGGTT GGTGGTGCTC AGTTATCACA GGGTTGGCAA TGATAGGGTT 002160 002161 GGCTCCATTT TTAATTCCCT AAACACTCCA AAGGGCTGAC AAGTCTCTGA AGGCCCTTTC CACTGTCTGC TTCTCCTCGT 002240 002241 GCCTGCCTCT GATTGGTCTC CCTGCCCCTC CCAAGTTCTG CTGATGCTCT CTTTGTGCCT CTGACCTTTG TGCCGGATCA 002320 002321 AGTAGTGGCC AAGGAAGATG AGCATGATGA GCAGCAGGAA GACAATGAAA GCCACGATCC CACCGATGAT GGCGTGGTAG 002400 002401 GTGCTGGAGG AGGAGGGCAC CGGACTGGGG TCTGGAAGAA AGGGCAACAC ACACAGTCAG ATCTGGGGAG AGCCCTTATC 002480 002481 TTATAGCATT CCAACTTGGC CATGAATAGT CTTACACAGC |
Predicted Small Protein
Name | NONHSAT007001_smProtein_461:709 |
Length | 83 |
Molecular weight | 8868.6772 |
Aromaticity | 0.0975609756098 |
Instability index | 57.0670731707 |
Isoelectric point | 8.59844970703 |
Runs | 10 |
Runs residual | 0.0139504804139 |
Runs probability | 0.0223812047342 |
Amino acid sequence | MDSWANTHPGTPFSKTDGHWGWQRKYQHGTTSQGPASSPGYSPGSLHGCMLSAGHISSGL PHSSLSHCYGREVSRWHLPPCP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLHHHEELLLLEELLLL LLLLLLLLLLLEEEEEELLLLL |
PRMN | - |
PiMo | - |