NONHSAT010242
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT010242 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2508 nt |
Genomic location |
chr1-:233083862..233086369 |
Exon number |
1 |
Exons |
233083862..233086369 |
Genome context |
|
Sequence |
000001 TCAGGACCCG CCCACCGCGT GTCGCAGGCC CCGCCCCCAA GCGGTGCTTT GACCGGAAGC ACCGCCCTCA AGACCACGCA 000080
000081 TGCGCCTTCT CCCGAGTCCC CGGTCCGCGC CTGCGCATTC AGCCCTCGGC ATTGGCGCCT GTGCCGCGGC AGTTCCTATA 000160 000161 GGCGGAGCGG GTTGTACGGT CTCTTAAGTT TCATTCTGGG TTCAGGGCTT TTGTGGGGTA TTTGCAGAGA TAAGTGCGTG 000240 000241 AGAACGTCAG TTATTAAACT ATTGCTGCTT CAAGTCAGCG CCATCACCCA AGTTCTGCCC CTTGACTCCG GACCTAGGAG 000320 000321 CTGAAATTGC CCAAGGCTGC CGGGACAGCC CTTTTGTAGA AGGTTTGTGA CCTGGAAGCA TTCCTCAAAG GGGGATGCCA 000400 000401 TGTTAATGAC TCCAACTTTg ttctcaaaca ttcctgcaga atagaatcag ctggggagtt ttaaacttgc tctgatgcct 000480 000481 gggtttcacc tgcagtaata gggagtgtca gaagacaaaa ttacaagttt agtttaaaga tctaattggc ttatatttag 000560 000561 gatctagaat cgagaaatag atcatttcat aaagcaaata gagtgttcca atgagttgtg cagaggaggt tggctttatg 000640 000641 ggcaaaaaaa ggctgaagaa caaaacaaag agtgggtatt tcaaagttac tttccttata gggttaaaac agattggact 000720 000721 tcgttattgt actgactcag gttaactaca atctcctgtt ttttgggaaa acgggcctgt ttcaaagttc agtttggtta 000800 000801 catggcactt ggcacaagtg actccattct ggtttggtct agtctgctag gacctagtgc aggaggttag tccaaaacaa 000880 000881 tggcctccca taaatcttgt ttaacatgag taattggtct tgagcgagtc ttgagcacct gtattctttt ttcttctttc 000960 000961 taaactccag gaagttcctg aagtgcgcta gggttgagaa ccactgGTGT AGGCAGGCTT CCCGTCCTCA GCCATGCATA 001040 001041 GGACGCCCAG TTTTCCCTCT TTACTTTCAC ACCAAAGTGT ATAAAGATCT CCTCTTGCAA AGAATTAAAT AGCTTCTCCG 001120 001121 TCTCACTTTA CCACTGCAAG TGTTCCGGCC AACGAATGAC GTGGCAGTGG CCTTGGGCCA CATTTACCTG TAAACTCTTT 001200 001201 CAGTCTAACA TGTGTACAGC TTAATTTGTA GTCAGTCGTT CCCCATCCTG GCTGAGAAAG CAGTTCAGTG AGTGCTCAAC 001280 001281 TTAATTGGTT TCTGCCCACA CATGGACCTC TTGGTTTCCC TTTAGCCTGA GACATATGCC AGTCCAATGA TTATCTAAAA 001360 001361 AAACAAAGTT GGATTTGTAA AATATAGCTG TCATCACCAT CATTTCTGCA ACATTTGTAA TGCTCTATTA TTATAACAGT 001440 001441 ATACTATTTA TTATCCCAAC TGTTAATGTA GGGCCTTCCA CCTTGATTTA TTTTGCAGTC CATATATGTT GAATACAGTG 001520 001521 AAAAGTTGAT ATAGTAAAGT AAATTCATAG GAGGAGCTTC CAAAAAAAAG GAAAAAAGTA TATGTATCTC TTGTATCAAA 001600 001601 AGTACTCGTT TTAAATGTTA ATCAGATAGC ATTTTCCATC ACTGAAAAGC AGTTTGGATT TGCAAGGCTC ACCGGAAGTT 001680 001681 GGGTTCTTTT GTTTTGTTGC TGTGCCTGGA ATTCTGGCAT CAGTTTAAGT AGCTCAAAGA TACATGGAAT TCAGATATGG 001760 001761 TGAATCAACG TCTCACAAAA CAGAAAAAAA GACTCCATAG TTGAATGTAC TTTATCCATG GAAAATGAAT Tatttggatg 001840 001841 gtagttccac ggatatcttc ttgttagaaa attcattgat ttgatgctta atttctacag tttcctgtat gtgttattag 001920 001921 gtaacaataa caaaaaatta aaTAGCTTAT ATCTCTTAGA GATTAACAAC AAAAGAAGAT GGCATAAATT GAAACAAATT 002000 002001 TTAAAATAAA TGGGATCTTA AAGTACTGTA CCATACTGAA TCCAACTTTT GCTTCCTATC TAATCAACAT CCAatggacg 002080 002081 gatgtttgtg tccccccaaa attcatattg ttgaaatcct aacccacaag gtgaaggtat taaagtgtgg ggccttaaag 002160 002161 aagcaattag gtaatcaggt cactagagtg gagtcctcat gaatgtgatt agtaccctta gaaaaaggcg ggagaaaact 002240 002241 tgctttctat ctctctgctc tctgccatgt gaagatacga ggagaagact gctctctgtc aaccaagatg agggccttcc 002320 002321 ccaagaaccc agtcgtgttg gcaccctgat cttaaacttc agcctccaga gttgtaagaa ataaatgttt ttttgtttaa 002400 002401 gccactcatc tgtggtactc tattatagta gcctgagcTA ACACACAAGG TAGAATTAAT TACCTAAGGA ACAGGTGATT 002480 002481 CCAAAGATTT CTTCTGCAAC ACCTGGGT |
Predicted Small Protein
Name | NONHSAT010242_smProtein_2198:2383 |
Length | 62 |
Molecular weight | 7010.1349 |
Aromaticity | 0.0327868852459 |
Instability index | 85.7901639344 |
Isoelectric point | 9.49444580078 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.0469292822235 |
Amino acid sequence | MNVISTLRKRREKTCFLSLCSLPCEDTRRRLLSVNQDEGLPQEPSRVGTLILNFSLQSCK K |
Secondary structure | LLLLLHHHHLLLLEEEEEELLLLLLLLLLHHHLLLLLLLLLLLLLLLEEEEEEEEEEELL L |
PRMN | - |
PiMo | - |