NONHSAT010559
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010559 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(AS),antisense |
Length |
1799 nt |
Genomic location |
chr1+:242147327..242277242 |
Exon number |
12 |
Exons |
242147327..242147451,242208335..242208444,242233308..242233425,242234983..242235083,242239946..242240017,242240622..242240845,242254891..242254994,242257161..242257359,242271352..242271480,242273348..242273474,242275153..242275216,242276817..242277242 |
Genome context |
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Sequence |
000001 AACCTCTGCC TCCCGGGTTC AAGCAATTCT CCTGCCTCAG CCTCCTATAT AGCTGGGACT ACAGGCATGT GCCACCACAC 000080
000081 CTGGCTAATT TTCGTATTTT TAGTAGAGGC AGGGTTTCAC CATGTACAGG CTTCCCACTG GGGCATGGCC TAGTAGATCT 000160 000161 GTGAGGAGAG AATCACGGTC CTCCAGACCC CAGAATGGTA GATCTAGCTA CAGCTTGCAC CCTGCACCTA GAAAACCTGA 000240 000241 TTGTTCTACA TGAATTAACT TATCTGTCTC TTTCTCCTCT CACTCTTCTT TATGTTTTTT TTCTTAGTAC TCATTACTAC 000320 000321 CTGGTGTGTG TGTGTAGTTT TTTTTATAGA GATAGTGAAA TCAAGATCCT GAAGCATTGC TTCAAATAAT TTTAAGAGGA 000400 000401 GGTCAAACAC ACCTGTTCCA GTGAAATCTT CGAGACAAAA CATAGTCAAA GCAATCAGTG ATGGGGACAC AGCAAGCTAT 000480 000481 GACTGTCTCT GTCTCTGTGG GGCCTCTCCC CATGGAGACA CCACCCGGAT GGTCCTCACC CATTTTCTTT TCCAAAACAC 000560 000561 TCATATTTCA TTTCTTGCAT CTTAGCCACC CATGTATTCT TTACAATTCT GAGGTGCTAA AAAATTTTTT CAGGCCAAGC 000640 000641 ACGGTGGCTC ATGCCTATAA TCCCAGCACT TTGGGAGGCC GAGGTCGGGG GGGATCACTT GAGGTCAGGA GTTCAAAATC 000720 000721 AGCCTGGCCA ATATGGTGAA ACCCTGTCTC TGCTTCGATG TACTTTCACA CTAGAATGTC ATTACACCAA GAATGTTTTC 000800 000801 TTTAAATCGA TAGAATAATA AATTTTGTCA TGCTGTCAGC TCACTCACAC ATAGGACTTA TTCTATGAAA TATAGCTTTT 000880 000881 TTTTTCCTTC AAATTCAATG GATTGAGCCA AGATCCAGCA TCTTTACTGA TGCTCAAAAG CTTTAATTAG GCTCATCTCA 000960 000961 GGAATCATGG CTCTGGAAAG CTTTCCACAG GCCGATAAAG GAATTCCTGC ACCTTTGTGA TCATGCTCTT CTACCTTTCA 001040 001041 CTTCCTGACC GTCAGGAGGT TTCCTACCAC CAGGTCCTTG GGCTGTGTGG GCTGGGGTGA GGACAGGCTG ACTGCCTCCA 001120 001121 CAGGCCACCC TTACTACATC TCTGACGCTA CCTGGGCCTC AGTCCACTAA GAACTGATTA TCTATAATAT AGATATTATA 001200 001201 TTACTATATT ATATATTATT ATTATTATAT TATTATATTA TCATAAAGGC CATTAGAGAC CTTTAGAGGT GCAATGATCA 001280 001281 TGACACTGGC AGGCTACAGT TTCAAATAGG CTGAAATGGT AGATTATAAC CAAAATGCAA AATTTCAAGT GAGTCTCTGA 001360 001361 TTCTTTAACA TTCCCCTTTT CAGGTATATA CTTGTTAATA ATTTTCAAAT GATAATTTTT TTCATATAAT ATTTTATCTT 001440 001441 TTATCCTTTC AAATAATTTT CAAGTTGAGA GCAACCTAAT TTTCTTTTGA AAGTTACTCT CATTTCCATA ATGTAAACTA 001520 001521 CTGAGGTACT TCTGTAGGGT GAGACCATGA GCCTTCAAAA TGGACCCACT TTGGGAAAAG CTCCGTAATG AGTAAATTGC 001600 001601 CAATGCATGT TAAACAGCAA TGAATGGTGT GCTCTTCCTA AGGCAACCTG ATGGCATCTC CATTTCCAGG CTGGCTTCTC 001680 001681 CTGTGGTGCC CAGTTTAGTG CCTGGTCTTA GGGACTGGGT TCTAACCAGA GGCTGGGCAT TCACTGACCT TTTGGTGCTT 001760 001761 GTGCTGGAGA TAGGCAGGTA GTCCATGACA GCGATGTAC |
Predicted Small Protein
Name | NONHSAT010559_smProtein_194:388 |
Length | 65 |
Molecular weight | 7533.9083 |
Aromaticity | 0.15625 |
Instability index | 40.77046875 |
Isoelectric point | 6.37139892578 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0444562209268 |
Amino acid sequence | MVDLATACTLHLENLIVLHELTYLSLSPLTLLYVFFLSTHYYLVCVCSFFYRDSEIKILK HCFK |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHLLLEEEEEEEEEEEELHHHHHHH HHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiii |