NONHSAT010737

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT010737

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1233 nt

Genomic location

chr1+:246947183..246955843

Exon number

4

Exons

246947183..246947345,246952810..246953000,246953748..246954148,246955359..246955843

Genome context

Sequence
000001 CCAGGCTGGA GAATAGTGGT GTGATCACGG CTCACTGTAG CCTCGACCTC CTCAGGCTCA GGTGATTCTC CTACCTCAGC 000080
000081 CTCCCCAGTA GCAGGGACTA CAGGTGCTCA CCACCATACT CAGCTAATTT TGTATTTTTT GTAGAGACGG GGTTTCACCA 000160
000161 TGTTGCCCAA GCTGGTCTCA AACTCCTGAG CTCAAGCCAT CCACCCACCT CGGCCTCCCC AAATCCTGGG ATTACAGATG 000240
000241 CGAACTACCG TGCTGGGCCT AATCTTACTG TTTTAATGTA AAAATGGACA GTCTTGAGGA AGACAGATTG GAAAGCAGAG 000320
000321 AGACACAGTG TGAAATCGCT GCTCTCAGAT CAGCACACGG GAGAGGCCAG CAGTCAGGAG GGGGCTCACC GAGTTTGTCT 000400
000401 GCACTCGCTC CCTCCGCAGC CGCCCTCTCC AGCTGGAAGA AGTCGTAATC GAACCTGCTC AGGTCCTCAC TGCCCCACTC 000480
000481 CGAAGGAAAC CCCACGTACA GGTGAGGTCA GAGGAGTGAA GTGACTTGCC CAAGACCACA CAGTGAGTCA GGAGCAGGCC 000560
000561 TGTCCCTCCA GCAGTGGTGC CATGTTGTCC CCAAGCCATG GTGGCAGAGG AGCTGGTGTG AACGCCCCAT CCTGCCACGT 000640
000641 CTGTGATGTG GGCACCTCAC ATGACTGTCC CCTCCCAGCT CTTGGGGGGG ACCTAGGACA TTCTGTGAGC CTGCAGGAAA 000720
000721 GTTTACCAAA TGCTGCAGCT TTGTCCTGGT GGTGATGGGC ACCCCGTTAA CGGCAACCTT GCATTTGCTA TGTGGAGTGA 000800
000801 CCGTCACTTT ACCGTCGGCA TTTGTGAAGG AAGCGTGTTT ATCTGAAATT CTAAGAAGAT GAGAGTCAAA GACACCCAGC 000880
000881 AAACGGCGGT TTCCGTGAGC AGGGTTGGAG CCCAGGAAGC AAACCAGCAC TGCACCCTAG ATTTCAGCCA GAGGACGAAA 000960
000961 GCCCTGCCCT CAGCTTTCTC AGACCAGCCC TGGAGTAGGT GGCCCGGGGA GACCTGGGCA GTGTCCCTGC TTGTCCTGCA 001040
001041 GACTGTGTGG CTCTGCAGAC CTCTAGATGG AGGAGGCACA ATTCTCTAAT GCTGGACGAG GACACTGATC ATGGAAACTC 001120
001121 ACCCCAAACC TTGAATCGTG ATAGCATTTG AGGCAGCCTG ACCGGTGCCA CATGAACCTG AAAGGAATCA AGATATAATT 001200
001201 TATTTTGAAA ATAAATCAGA CACTTTCAGA ATT
[back to top]

Predicted Small Protein

Name NONHSAT010737_smProtein_581:754
Length 58
Molecular weight 5721.3166
Aromaticity 0.0350877192982
Instability index 65.0333333333
Isoelectric point 5.57464599609
Runs 7
Runs residual 0.0311403508772
Runs probability 0.0252731723321
Amino acid sequence MLSPSHGGRGAGVNAPSCHVCDVGTSHDCPLPALGGDLGHSVSLQESLPNAAALSWW
Secondary structure LLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHLLL
PRMN -
PiMo -