NONHSAT011627
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011627 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2531 nt |
Genomic location |
chr10-:17683283..17685877 |
Exon number |
1 |
Exons |
17683283..17685877 |
Genome context |
|
Sequence |
000001 AAAAACAGGT TGAGTTCGGG TCGAGCTGTG CGCCTTTTTT CCTCTCGCTC TCTCGGTTAT CATAACCTTG TATTCCCTCT 000080
000081 GGAAGGAAAT GGAAATTCCT TTGGATCATC TTCTAGGTAA ACAGTTTAAT TAGCTGCGTG AGGTGACAAA CCTGCTCGGA 000160 000161 TGAAGTCATG GGAGCTGAAC GAATTGGCCT GAATCCCAAG AGGGGAGTGT TCAGGGCGCG CGTGTCCCTC GGAGAGGCTG 000240 000241 AGGTAACGCT GGCTCCTTCC CGGGAGTCCC TGAACGCCCG GCTTTGGAAT CTGCAGACAG CTCTTCTAGC AGGGCGTTGG 000320 000321 CACCTACTGA CTAACCGTGC AATCACTCAG CAGCTGTGAT GGTTGGTGAC ATGTCTTTCA CAGCCCAAGA TAGCCTCCCT 000400 000401 AGACTGAGCA AAAAAAAGAA AACAGAAAAA AACTGGAGCT AAAAGTTGAT CAGTGAGTGA TTCCTAGCAA CCCAAAATGT 000480 000481 TGGTTTATTT ATTTTACTTA TAAGTTTAGT TAACCAATAA AAATTATTCT CTGTGTGTTG GAGAAGTTTT AAGGAGCATC 000560 000561 TACTAGAGAT GTTGCGTCCC ACTTGGAACA AACTTAGTAA GCACATCTTG TACGTAAATG GAAATTATCC CGCAAATTAC 000640 000641 GGCATCTCCA AATGTAGCGT GGAAACTAAT ATTGACATGT CAACACAGGA TTAATACATA GTAATCAAAG AGTGCTTAAA 000720 000721 AATTCATTAT AAATGAAGTC CCACCTCTAA AAGTGAAATG TGCAAATTAA AGTAGCAGTT AGATAATGTT TTGTCATTTA 000800 000801 GGTAGAAATT ACAAAGAATC GGCCGGGCGC GGTGGCTCAC GCCTGTAATC CCAGCACTCT GGGAGGCCGA GGCCGGCAGA 000880 000881 TCACCTGAGG TCAGGAGTTC AAGACCAGCC TGGCCATGGT GAGACCCCGT CTCTACTAAA AGTACAAAAA ATTAGCCGGG 000960 000961 CGTGGTGGTG CGCGCTTGTA ATCCCAGCTA TTCGGGAGGC TGAGGCTGGG AATCGTTTGA ACCCGGGAGC GAAACTCCGT 001040 001041 CTCAAAAAAA GAAAAAAATT GCAAAGAATC AGGGATGTGA GGAGTCAGAC ACTCACATAC TGTTGGATGA AGTGTAAATA 001120 001121 CTGTATAATC TTCCTAAGGG AAATATTTGG AAGCATGTAA AAAAATTTTT AAAACCTTAG GACCCAGCAA TTCCATTTCG 001200 001201 GCAAATTAAT CCTAAAGACA TTCTTTTAAA ACATGAACAA AGGTATACAT GGCAACATTG TCTAAAGGAT CAAAGCATTG 001280 001281 CCAGCCATTA AATGTCCCAC ATTGAGTGAT TGGACAAATT GCTTCACCTC TTGGTGTCTC AGTTTCCTCA TGTGTAAGAA 001360 001361 ACAGGAATAA TAGGGTTGTG AGGATCAAAT GAATTAGTAC AAGCAAAACG CTTATTACAG TGCCTGGCAT AGAGTAAGCA 001440 001441 CTAAATAAGT GTAACTGATC ACTGTAATTT ACACTGGTCA ATTAAATCAT AGTACATAAG ATGTGAAAAC TACACAGCCA 001520 001521 TTTAAGGTGC ATAATACAGA TTCATATTTA CATAGACATC GGAATACACA AGTTTTCAGA AGGAAGTTAC AAACCTTATA 001600 001601 AAATTACAAA TGCCCACAAT TTTAAAAATC TGAAAGGAAA TACATGAGAA TATTATGACA TGATTGTCTC TGAGTGGCAA 001680 001681 GATTCTAGAC AATGTTTTTG TTCTTTGTGC ATATTATTAT TCAAAATATT TTAATGATGA GCGTGTATTC CTTTCAAAAG 001760 001761 CAGAAAAAAT GTTAAAATAC AACAATGTCA AAAATGGTAT GTTGGTACCA CCAGTTTCTT AATGTTTTGA AGGGCCAATA 001840 001841 CCAAAAGCGT GCTTGTGTTT CATTATGACA AGTATAGAAT TATTCGGAAA TATCACGACT GATACGGAAG TCAGAACATT 001920 001921 CCCTCTCAAA AATGTGCTTT GATTGCTGGG CTGACAGAAT TAGGTGACAA CTTGTTTACC TTAAGATCCT GAGCAGTGTC 002000 002001 TTGGGCCATT ATCATAAGTG CCTGAGCCAG ATATTGGTGG CTCAGACTGG GTGTATCAGA GCCAGATATT GATGAAAATG 002080 002081 CATTTGTACA TGTTCTGTAC TCCGGACTGA ATTACTCTGT TGCCAGCAAT AAGCCAGGGC CCAAACTGTT CAAGCCTTGA 002160 002161 TTATCAATAT GTGTGCACTG GGAGTAATAC ATACTAGTAT TGAGAGCAGT ATCCGTGTAT TCTGACCTAG AATGACTTTA 002240 002241 GCTGTGGGGG CAGGGGGGTC TCGATGATTA ATGTGCTGTA TAAATAATAA ACATTTTTTA AATATAAAAT TTTTAATGTT 002320 002321 TAACTTAAAA GACAAACATA AAAAGTGAAA TGCTTTGTAT TTTGTGGTTA ACGTCCCTTA TTATCCCTTT AAAATACTGA 002400 002401 AATTCTATGA GTTTCACTTT TAGTATTACC ACAGTTTTTA AAACGTTTTG AAGACTACAT ATCAATGGCA TATTAAAATG 002480 002481 TTTCTGTAAT GTTGTATGTT TAATAAATTC TGTGGTTGTT TGTTAAATGT T |
Predicted Small Protein
Name | NONHSAT011627_smProtein_167:358 |
Length | 64 |
Molecular weight | 7023.0555 |
Aromaticity | 0.047619047619 |
Instability index | 44.7650793651 |
Isoelectric point | 11.7819213867 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0478071654542 |
Amino acid sequence | MGAERIGLNPKRGVFRARVSLGEAEVTLAPSRESLNARLWNLQTALLAGRWHLLTNRAIT QQL |
Secondary structure | LLLEEELLLLLLLEEEEEEELLLEEEEELLLHHHHHHHHHHHHHHHHHLHHHHHHHHHHH HLL |
PRMN | - |
PiMo | - |