NONHSAT012609
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012609 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1979 nt |
Genomic location |
chr10-:31605445..31607423 |
Exon number |
1 |
Exons |
31605445..31607423 |
Genome context |
|
Sequence |
000001 AATGAGATTG AACTTCAGCT GGATTGAAAG AGAGGCTAGA AGTTCCGCTT GCCAGCAGCC TCCTTAGTAG AGCGGAATGA 000080
000081 GTAATACCCA CACGGTGCTT GTCTCACTTC CCCATCCGCA CCCGGCCCTC ACCTGCTGTC ACCTCGGCCT CCCACACCCG 000160 000161 GTCCGCGCTC CCCGCCCTCT TCCTCGCGTA GAACCGTGGG ATCCTAGGTG GCAGGACTCA GAGCTAAGGT ATCCACAGGC 000240 000241 CATGAATTCC TTCCTAAATG AGCGGTCATC GCCGTGCAGG ACCTTAAGGC AAGAAGCATC GGCTGACAGA TGTGATCTCT 000320 000321 GAACCTGATA GATTGCTGAT TTTATCTTAT TTTATCCTTG ACTTGGTACA AGTTTTGGGA TTTCTGAAAA GACCATACAG 000400 000401 ATAACCACAA ATATCAAGAA AGTCGTCTTC AGTATTAAGT AGAATTTAGA TTTAGGTTTC CTTCCTGCTT CCCACCTCCT 000480 000481 TCGAATAAGG AAACGTCTTT GGGACCAACT TTATGGAATA AATAAGCTGA GCTGTATTTC AAGTAATATA GTTATAAATT 000560 000561 AACAATGTAG CAGTTATTGA TAGAGAAATT GAGAAAACTG AAACGTGACC Ggagtattgg aaataacgta gtacatcacc 000640 000641 tagcacaatg acacatagta ggtgctcaat aaatttatgc ttataattTT TGTCACTTCT ATGGCAGGAT TTTTTTATTA 000720 000721 GGTTAAAATT ATCTTTTAAA CACCTTCCGG AATTTTAGAA TATTCATTAA TAATGTCTTC AAACCTTTCA ACTGAAATAA 000800 000801 ATTTACAGCT GAAGTCTGAT GATTTAAAGT TAGAAAGTTT AATCTTGAAT ATAAATGAAC ATTTTCTCTC CCACATTTTC 000880 000881 TTGGGCATTT TGAGAAGTAA ATGCGTTATT TATTGGTCCA TGAAATGTGA CTGTAAATAT TCTTTGCTAT ACATTATGTC 000960 000961 TATATATCTG CATTCATCCT CAATGCCAAA ACTAGAATCA TTAGTCTTAA TGATCATTTT AAGTACAGGC AGTCCTCGCT 001040 001041 TTCCTTGATA CCATGTTAAC CGAAACTTGT GTATGTCAAC ACGGTGTCCT TGCTTTGCTT GGTTAAGTGT GAGTTCTTCC 001120 001121 TCCCTTTTTT TAAGAGTTGT ACAATGTTTT TCAGTCGCCT ACCGAATCAG GTCATAGACT ATGGAATTGA CCCCACCCCA 001200 001201 CCAACATTTT TACAGCTACC CTGATTTCTG ACCAGAAAGG AAAAAAAAAC TTTCCAGCTC TATCACACAT TTTACCTACT 001280 001281 CTTAAACTTA GGAGGTATTA CAAATAGCAT TTTCTCATGT TCTCTTTCTG GCCTGTACCT CCCTGCTAAG CTTCCTTCAG 001360 001361 TGTTCATCCT CACCTCATAG AGAGATGAAG TGAAGAGACA AACAGAAGTC ATTTTCTTCC TTACTTTAGT GGTTTCTGGT 001440 001441 TTAGTTAGTT TGGGCCAAAC tgtggacaag taccttttca ggtaactttt ttttcttatt tctatgtcct caacacctag 001520 001521 tggagtacgt agccaatagt agatgcttaa taaacatttc ttaaattaat ATTGTTGACC TTTTCTGACC CTGTTCTTGA 001600 001601 CAGTAAGGTA CATAATCTGC CTTCATCCCT TTAGTCCTTA GGAACAGATA AAGTCATGGA TATGAAAGTG ATCACTGTCA 001680 001681 TTAATATCCA CATTAAAATT GCTCTTGATT TTAGTTTCTC CATAATCATT TTCCCTAAAC AATGAACTCT GTTCACCTTT 001760 001761 TTTTTTAAAA TATGCACAGT GAATATTACT GGTAGCCCAA ATCTTCTAAC ATAAAATTTC CATTTTGTAA AAGCTTCTGA 001840 001841 TAAGCATATA TGTTATGAAT TGAATGTTTG ATTATTATAC TTTAATATTC TTGAAAATAT TGATACCTGG ACTGGAAAGA 001920 001921 AAACAGACAA AAGTAAATCT CAGAATAAAT TACTGCTTTA AACATGATGC ATGTGTGAC |
Predicted Small Protein
Name | NONHSAT012609_smProtein_1655:1744 |
Length | 30 |
Molecular weight | 3376.1235 |
Aromaticity | 0.103448275862 |
Instability index | 47.624137931 |
Isoelectric point | 8.27557373047 |
Runs | 6 |
Runs residual | 0.0073275862069 |
Runs probability | 0.0421598068658 |
Amino acid sequence | MDMKVITVINIHIKIALDFSFSIIIFPKQ |
Secondary structure | LLLEEEEEEHHHHHHHHLLLLEEEEELLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiii |