NONHSAT012855
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012855 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1714 nt |
Genomic location |
chr10+:42686975..42689514 |
Exon number |
2 |
Exons |
42686975..42687136,42687963..42689514 |
Genome context |
|
Sequence |
000001 AATATAAGCC TCTGGACCTC ACTAAGTCAG GGCATGTCCC TGCTTGCACT ATGCATGACA CTTACCTCTT TTACTCTTTA 000080
000081 GCAATGAGGG AATGTCATCC TTACCCAGAT GCCAGCCACC CGTCTCACAT CCAGGACAGA GAGTCTCCAT CTCCTCTCCA 000160 000161 GCTACAGGTT TTATATAGCA AAAGAACCAT TTAAAGACTT GGGTTACAAA TGTATTTTAT TTTACCTCTG GCATGCCTTG 000240 000241 GCCTGAGAAA GCATTATATG GTGGCACAAT ATTTGTAACA TTCTCATCGC CATCTGGTGG TGGTTCGAGG TATGACGTTT 000320 000321 TGAAAATCTA GCAAGAATTA AAATATGTCA AGTTAGAAAG AAAAATTCCA GATTATTATT AAGATATAAT TCATTTTGCC 000400 000401 CCAAGTATAT ACTTCAGACT AAGCATCCTG GAACTAGGTT CTATAATTAA ATAGATAAAT TACACTGACA ACAATGAGAA 000480 000481 AGAGCCTTAT CATTATTATT GTCTTCCTAA TAATAGAAAC TTTTATAAAT GCATGCAATC CCAGGTAACC AAAAGTTTCC 000560 000561 TTATAAAGTG TAACAGCGGA GCCTCAAAGG TGGCACTTTG GCAAGCCTCT TTTTTTGACT ATGGCTTTTC AGCTTCCTTT 000640 000641 GTGGGCTCCT TTTCTTTCAT CTTTATTTAA ATAATATTTC CTTATGTTTT ATCCCCAGCC CGTTGCTTGC CTCTGTACTG 000720 000721 CCTCCCTGCG AGACTTCATT AAGTATCAGA ATTTTACCCA TAGCTCATAT GCTTATGATG CTTACCTTTT CAGATTCGTA 000800 000801 TATTTAAATG TTTTGTGGTT ATTTCATTCT GGATGTCCTA ACTCAACATG TCTCACCCCG GGCCTGCTTT TGGTCTGCAT 000880 000881 TTCCTACCTC TATTAATAGC TTCAGTCATT AGCCACGGAC ACCAGACAGT CTCGGAGTCA TCCTGAACTC TGTCTTCCCC 000960 000961 TCCTTCCCCA AGTCAATCAC TAATCAAGTC CTGCTAATAC ATTACCTTAC TATTTCTGAA ATCCATCCCT CTTCCTCATT 001040 001041 CCTACTAACA TCCTAATTTA AAACTTTATT ATCTTTTACC TGGACTATTG TCTTAAGACA ACAACTTTAA TCCGTTGCTT 001120 001121 AGCCTAGGTG TAATCCACAG AGGATCTTGT CTGTCTAAAA TGCCCCTCTA GCCACATCCT TCGCCTGCTC AGATCTTGTC 001200 001201 ATTGGCTCCC ATGAACTGAA GTTGAAGTTT AAGCTCCTTA GGACAGCATA CACGCGCTTC TATGATCTGT TCCCAGAACA 001280 001281 TATTTACTGG TTTATTTCAT ATCATGGCCC ACTTTGTATT TTACACTTTT GAAATACAGA CAATCATTAC ATTCTCCCAA 001360 001361 TAGTACTAAG CTAGTGTATG CCTAAAAGCC TTTGCCAATA TTTTATCTTT TGTTGAGAAT TCTCTTAGCT TATTTTGTCA 001440 001441 CGTGGTTAAC TCCTTATGTC CTTTCATGAC TCACAAGTCA AGACTTCAGG AAACCTTCTC TAACTCCCAG GCTGGGCTGA 001520 001521 GTGACCCTTT TCTGGGTAAA TAATGAACTC TAATCATACT CTTCATAGCA CTTACCATAC TAATTTGAAG TCTGAAGTAT 001600 001601 TCCATTGTCT GCCTCACTTT ACTTAGGCAA AGGAACCATG TCCTAGTCTC ATTCTGGCCT CAGGAGTTCA GCCTGGGTGA 001680 001681 CAGTGGGAGA CTGTGTGTCA AAAAAAAAAA AAAT |
Predicted Small Protein
Name | NONHSAT012855_smProtein_683:895 |
Length | 71 |
Molecular weight | 8164.4546 |
Aromaticity | 0.214285714286 |
Instability index | 55.6201428571 |
Isoelectric point | 7.62139892578 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0609559138971 |
Amino acid sequence | MFYPQPVACLCTASLRDFIKYQNFTHSSYAYDAYLFRFVYLNVLWLFHSGCPNSTCLTPG LLLVCISYLY |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL EEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHH HHHHHHHHHH |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTT TTTTTTTTTT |