NONHSAT012944
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012944 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1974 nt |
Genomic location |
chr10+:43674865..43710887 |
Exon number |
5 |
Exons |
43674865..43675814,43677333..43677381,43682611..43682793,43689644..43689866,43710319..43710887 |
Genome context |
|
Sequence |
000001 ATTGACATGG CTGGACTATT TTAACAAATT ATTTCTTCCT CCTTCCCCGA CCTTTTGGCA ATATGAAGCC TCTGCTGTTG 000080
000081 CTCCTCAGGG CCTGTGCAGT TATCCTAGGA TGGCATTGGA TTTAGCAGGG CTCTCTTTAT CTCTTTCCAT GCCTCCATTG 000160 000161 GTATCACTCC TATTAGACTC CACTGACTGT TCACTAATTG CTGTCTTGTT TTTGACAATG CTCTGGGGCA TAAATTGCTC 000240 000241 CATAATCTGT CCCTACTAAA TTGGGCCCTT TTGCAGGGAT AGTTTTTGCA GCAAGTCTTT GAGATTTGTT CAGACCCCAG 000320 000321 GAGGTATATT CTTACTATCT CTCTCTGTGG TTCTCTCTAG TAAATTAGCT GGCCTACAGT TTAGCTGTTG CCCTCCTGGA 000400 000401 GTTACCAGCC TCCTCTTAAT TGCTTACTAC CAAAATCTCC ATTATTTTCA AGAGGCTGGA ACTTCTCTAA ACTCTGAACT 000480 000481 TCTCTACATT CTATTTTAAA TAAAGTCAGT TCCTTAGGGA AGAACTTTGG AGCACTTTGT TCTTATGGAC TTCCTCTCCC 000560 000561 CCGGGGGAAA AAATCCATGA GGTTTTGCCC TGAGGATGGG GACAGTGACA CACTTATTAA GCAGAGTGAC CACCTCTGCC 000640 000641 CTATGAGCAG GACACTGGGT AGGGGCAGGA GGACCCCCAG TATTCTCAGC TGGCCACACC TGGAAGTGGA GCCTCCACCC 000720 000721 TGTTGCTGTG GGCTGGGTGA AAAAGAGCTG CACCTGTTTA GAACTTAGAC TCTTTATTTG GAGCTTCTGT TCCCTTGTTT 000800 000801 CCTTTCTTCC TGGTATTCCC ATTATACATA TGTTACATCT TTTGTAGTTG TCCCACCGTT CTTAGATATT TTGTTCATTT 000880 000881 TATTTTCAGT CTTTTTTTTT CTTTGATTTT CTGTTTTGGA AATTTTTATT GTCATATCCT CAAGCTCAGA TTACGAAGAT 000960 000961 GACGGGATTA AGAGATTAAA GTAAAGACAG GCAATCACAG CCTTCTTATC TTAGTAGTAT GCATTTAAGT TTCTTCCATG 001040 001041 CCTTTTTATG GCTTGAGAGC TCATTTCTTT TTAGTAATGA ATAATATTTC ATTGTCTGGA TGTAACCACA GTTTACCCAT 001120 001121 TCACCTACTG AAGGGTATCT TGGTTGCTTC CAAATGTTGG CAATTATTAA TAAAACTGCA ATTAACACAG TCCATACAGC 001200 001201 CTGGCTTAAC TAGGTATCCT GAACTTACTT ACTTATGTGA CCATGCAATA CAGCAGCCAG TGACATCTTT TTGGAGCTCA 001280 001281 CAATGAGGAA AGCAGGACTG AACGTGCCTC CTATAGCTTC TTTCGAGTCT CACCTTATTC AGTGGAAAGC CCTTTGTCAC 001360 001361 ACAAAGTGTT GCCAGCTGGA GACAAAAGTC TCTTGCCCAG TCCCTCCAGG GAGACAGCCC GGAGAGGCCC GTTTCTCAGA 001440 001441 TGGGGACACT GAGGCTCAGC TCACAGGACC CAAGAGGCCG TAATGTGCAG GACTGCCCAG GTCTGCCCTG CTGTTCCTCG 001520 001521 GACCTCAGCA TTGCCCCTGA GAGCACCTGG CAGGGGCATG GCCCCCTGAG CATCAAGTGC AGGCTGAAGC CCTGGCCTGG 001600 001601 ACATGTGGAC AAGCACACAT TCCCACGACC TGCAGATGAT TCGGGGGACC GATGAGCTCC CAGAAGCTCA TCTGTGGACT 001680 001681 TCAAATTAAG AAACCCAGCT TCCTGGAAAA CTGGGACAAA AACAGCCCTC AGGGCCCATC ATGCATGAGT CCCAGGGATC 001760 001761 TGCCAGGAGG TGGAGGAGGG GTTCGAGCCA GCCCCCTGCC TCTGCCAGCC TTGGCAGGGG GCTTCTTTCT GAGGCAGCAC 001840 001841 GTGGGCTTCT ATTTTTTAAC CTACTCAACA AAAACGGAGA CTATTTTTAG CTCAGCAAGC TGCAGGGCAT CACAATTAGC 001920 001921 AACTGAAAAT TACACATCTC GCCTGTCTCC CCTCTCTTGG CTGGCAGGGA GAGC |
Predicted Small Protein
Name | NONHSAT012944_smProtein_1037:1285 |
Length | 83 |
Molecular weight | 9357.9236 |
Aromaticity | 0.109756097561 |
Instability index | 56.3720731707 |
Isoelectric point | 8.98834228516 |
Runs | 7 |
Runs residual | 0.0505358462676 |
Runs probability | 0.0699901582255 |
Amino acid sequence | MPFYGLRAHFFLVMNNISLSGCNHSLPIHLLKGILVASKCWQLLIKLQLTQSIQPGLTRY PELTYLCDHAIQQPVTSFWSSQ |
Secondary structure | LLLLLLEEEEEEEELLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LHHHHHHHHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiii |