NONHSAT015341
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT015341 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2678 nt |
Genomic location |
chr10+:87192619..87208718 |
Exon number |
3 |
Exons |
87192619..87192914,87204482..87204685,87206549..87208718 |
Genome context |
|
Sequence |
000001 GAAGAAAAGC CACCCTGGGA GCAAAGCAAG TTAGGGTTGT AAGAGACATT TCTGAGATTA AAGCAGCCAG ATCTATGATG 000080
000081 GGGTGGGTAC GGGTGGTTAA AGAGAAACAG AACGTGAGAA TGACTCATGA GACTATTAAA CTGACTTAAC TGAAATTTTA 000160 000161 AAAAAGGGGG AAATACCAAC TACGATGCAC CCCCCCCCCC ACCACACCAT GTTTTAATGC TACTCAAGGT CTATGGCTGG 000240 000241 GAAAGGCCAC TTGTTTTTCT TCAGTTAATG CTGAGACTGT TTGTCTGCCA GAGACACCCC ATAGAGGATC CATCCTTAGA 000320 000321 CCTCAGTTAA CGGCCTGGAT CTGGAAAGTG GTGGCTTCAA ACAAATCCAG CCCCTGCATC CTCCAGAGAT CACAGCTGAC 000400 000401 ATAGAATGTA TGTGTCTGCG GCAGGCAGCC ATGTGTGCAT CAGCCAGCAG CCTCCCCATC AGCACCCTAC AGTGGAATTG 000480 000481 TGGGGCTTCC CCCAACAACA CCCTCCAAAA TCAAGAAAAT ATTTCAAGGA AATGACACGT GGAGAGGACA TGCAGGACAA 000560 000561 GTGATGAGAA TAATCTTGAT CTGAAAAACC CTTGTTCTGA AGACAAGCTT GCTAAATGCT TGGAAACCTG GTTTCCAAAC 000640 000641 AGCACCTCTG ACTGATGTCT GGAAATCATA CTACCCTCTC TGAATCTTGC AATAGGCTTC TCCAACTGAC ATCTTTCACT 000720 000721 GCATCATGAG GCAGTAGCTC CTCTGAGTCA CTTCCCAGCT GGGACTGGGT TTGCTCAGCC CAGCCACTCT GCCTCTCCCA 000800 000801 CCCCTCCTGC AGCACCACCA TTACCCACTT TTTTTTTTTC TGGTTTCTGT AGAGCAGCCT GGTCCCTCAT AGACTCGAAT 000880 000881 TCTCTCACCA CCAAGACACT GGGCTAAGCA AGCTCTCTCC TGGCCTGCAG CACCTTGGTA TTCTCAGCCT CACACTTGAG 000960 000961 GGCATTTTTA TTCTTTTCTT TGCAGTCATT TTGTCCTTTC ACTGGAACTT ATCTTCCCTG CTTCTCAAGT CAAGAGTGGT 001040 001041 ACCATAAGAA AACCATGCCT TGTTTCTGCC AGCCTCAGCT CTAAGCAACT CCCACCTGAA CCGCTGCAAG AACCTCCCAA 001120 001121 CCATCCCCTC CACACCTAGG CATGCACTTT CTAATCTATT TTCTATACCT CAGCTACAAC CAAAGCCACA GAACACAGCA 001200 001201 GCTAAAGGTG CAGCCTTCAG AATCACCCCA AGTTCTAGCT ATTTCGCTTC TTTCAGCCTT CCTATCTGCA AAGTAGGGAT 001280 001281 GATCATTAGA TTTACCTTGT TCAATGGTTG TGATTGCTAA ATGCAACAAT GTGCAGGGTA CTCAGCAAAG TTGCTACCAC 001360 001361 AGTGCAAGTG CTCCATATAT TTTACCTATC ATTATCATCA TCTTCAACAT CATTACCATT GCAGACCCCA TGTGCTTAGA 001440 001441 ATTGGCCCAG CTTCTCCTGG CAACTGGACA GAGAACAGCA TGAACCACCA TGGCTTCTTG CACCACACTT CGAAAAAGGA 001520 001521 AATATTATTG CTCCAAGATC CTGCCCACAA GACCCACACT GGCATGTCAG TGAGACTGTG ATCATCATTG TGGGCACCAT 001600 001601 CATAGTTGCA TAACAACAAT TGGCCATTGG ATTGCACAAT ATGGCACAGA GAGCCACCTC TAGGGAGTCT GAAACCCCAT 001680 001681 GTCCATGATT GAAGGTGATT TTGAGATATG GGAAGAGCAA GCAGGTATCA ATGATGAAAT CTAGGTGCTC AGAAACAGGG 001760 001761 CAGGCAAAAC AATTGCATGA ACCCACAAAC CTCCACAGTG TCTGTAATGT GTAGTCCACT TTTGTGGCAC TACATTTTAT 001840 001841 CTCAGAGATA CAACTAATCT CAGTCTCTTT ATCTGCCAAG TTTCCTGAAT CCTTCTTTCC AGGATGAATA AATTTCCTGG 001920 001921 CAAAACAAGA CCCAGGGGAA AGTTTTGAAT CCATATAATA ATATATCACT GCATTTGTCA CGAACTCTTG ATTCAACAGA 002000 002001 ACTGATTTTG TGCGCTTAGT CCTTGCCCTG GGGATAGAAC ATGAACAAGA GAGAAAGGGG GCTGCTCTCA TGGTCTTATC 002080 002081 CTTTAGCAAG AGAGATAATA AACAGGTAAA GACATAAATA AATAATAGAC CTTCGGAGGA TGGTAAGATC TACAGATAAA 002160 002161 AATATAACAG GGTAATGAGC CAGAGAAGGT TAGAGAAAGG GAGGATTGCT GGGAAGATGG AAGGGGCTGC ATGTGGCCAC 002240 002241 TGGGAAGATG TAAACATTTG TAATCCAGGT CTGTTGTGCA TGGAACAAGG ACACACAAAC AGGGTAGTAT GGAGAAAGGA 002320 002321 CAAAGTGACA TGTGCTGGCA CCAAGAAGGA GCTCCAGAAA TGATGGGTGT TATGTTAGAA TCTACTGGGT GTCATCAAGG 002400 002401 GTGACCCAGG TACAGATCCT CTGGACTCGG GGGGGAAAAG AGCCAGACAA TTAGACAAAT TGGAGGCACC CCTTCCCAGG 002480 002481 AGAAGGCCCT TTTGAGCAAG CTGCCAGTGA CTGTCCCCTA CATTCAGAGA TGCTGCTGCC TGAGCTGCCA GGTTTCACAT 002560 002561 GCAAAGGGCT GGCTGGGAAT CAAGAGGCCC TTCTTCTCAC GTTAAAGCGT AGCAGTCTGT TCTGTTCTCC TGTCATGTCA 002640 002641 TAAATAAAGG AGCCTTGATC TCAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT015341_smProtein_2174:2362 |
Length | 63 |
Molecular weight | 6998.0926 |
Aromaticity | 0.0322580645161 |
Instability index | 51.2774193548 |
Isoelectric point | 9.33831787109 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.032647620883 |
Amino acid sequence | MSQRRLEKGRIAGKMEGAACGHWEDVNICNPGLLCMEQGHTNRVVWRKDKVTCAGTKKEL QK |
Secondary structure | LLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLEEEEEELLEEELLLLHHH LL |
PRMN | - |
PiMo | - |