NONHSAT017501
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017501 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1472 nt |
Genomic location |
chr11-:2320655..2323102 |
Exon number |
2 |
Exons |
2320655..2320937,2321914..2323102 |
Genome context |
|
Sequence |
000001 CCCAGGAAGA CATGGCCTCG TTCTTGGTGT GGCCACTGAG GACGGCGCTG AGAGGGGGAA AGTCATGGGC AGGACCTGGT 000080
000081 GTGGGATGTG GAGGAGACGG CGCCCGGGGA GGAGGAGGTG AGCTCCCCGT CCTGGGAGTG AGCAAGTGTG GACTGGGCCT 000160 000161 TGGGGGCGTA ATCCTTGGAG GAATTTGGAT GGGGTCTCCT TGGAACATCA TTATTGAGGT GTTCTTAGGA AACACCCTTT 000240 000241 GAAATGTCCT GTGACAGCTT AAGTTTTGAG AAGGTCGTTG GTTTTAATGC CTTCGTGGGC GGCACTCATG GATATTTTGT 000320 000321 CGCAGAGCCT TCTTGGGGCC ACAGGGGTGG GCTGGGGCCT CGCTCACACT CACGTGGGGC CTCCAGGGGG AGGCTTTGTA 000400 000401 AACCTCGAAT TTGCAATTAC ACCGAGCCGT GTAATTACGT ATGGGTGGGG GCAGCGCTGC GGCCCCAGTA CAGGCAGGGT 000480 000481 TTCCGTGGGC CTCTGGGGCA GGGTGGGCCT GAAGAGGGTG AAAATGTTCC AGGTGAATCC ATCATTCAGG GACCACTCCG 000560 000561 GGCCCTCCCA GGAGTGCTAA CAGGCGGCTC TGCTCGCCCC TCGGTGCTGG AATTGCTCCT CCTGCATTTG GTCAGGACCT 000640 000641 CATCAAGGGG GAGGGGGCCC CAAGACCTGC AGGCATGGCA ACCCCAGCGT GGCTGTGGGA AGAGGGCCCA GCTGCCGCCC 000720 000721 GCTCAGGAAC GCTGCTGGAG GAACTGCTGA GGCCACCGCC TCCCTCCCTC TGCGGAGGGA GAACCAGGAG AACCAGGAGG 000800 000801 GACAACCAGG ACCCCCGTCC AGCCCAGCAC CCCCAGGCAG CACCCTCTGC AGCTCTGGCC CCCAGGAATT CCCACCCTGA 000880 000881 GTCTGTGGGG GCTTGTGGAG ACCTCAGATG CCTGGCACCC ACAGTGTCAC TTCAGCTGGG GGCCTAGGTG TGGCTCAGAC 000960 000961 TGGGGCGCAG GTATGAATGT AGGGGTGGCA ACAAGAGTGA AGGTACCAGG TCTAGGGGCA GGAGGCCCCC GGGCTGTGCA 001040 001041 AGTGGGCAGC CCGTCCTCTC CAGGGAAGAT GAGCTGCTCT TGGCTATGTC TGGTTCGCCC CTAGAATTGT CTCTCTCCAA 001120 001121 CCTTGACCTC CCTGGAGCTG GTGAGGCGGG CCTGGAGCAC CACCCGCTTC TGGGACACCT CTTCATCAGG AGGCCCCTGG 001200 001201 CTCAATGATG CCACCTGCAG CTGCCCAACC CTCCGCCCAT GGTGCCCTTG TTCCACCTGC CACCGCTCAT GAACCTGTGG 001280 001281 ATCACCCAGC TCTGCACTGG CTTGCCTGCT GCTGCTGTCT CAGTTTACCT GGGCAGTTGC CCCTGGCTAT CCGGCTGGGA 001360 001361 TGGGACTTGG ACTTAGAAGC AGGCCCCTCC TCTGGAAAGC TGTGTCCTCG GGCCAGGAGG TGGCAGCCTC TACCTTCCTG 001440 001441 AGACAGGGAC CCTTTTCTGT CCATCAGAGG TG |
Predicted Small Protein
Name | NONHSAT017501_smProtein_674:946 |
Length | 91 |
Molecular weight | 9526.6758 |
Aromaticity | 0.0222222222222 |
Instability index | 87.0288888889 |
Isoelectric point | 8.71063232422 |
Runs | 11 |
Runs residual | 0.0176366843034 |
Runs probability | 0.023670729553 |
Amino acid sequence | MATPAWLWEEGPAAARSGTLLEELLRPPPPSLCGGRTRRTRRDNQDPRPAQHPQAAPSAA LAPRNSHPESVGACGDLRCLAPTVSLQLGA |
Secondary structure | LLLLHHHHLLLLHHHLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLEELLLLEEEELLL |
PRMN | - |
PiMo | - |