NONHSAT026005
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026005 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1837 nt |
Genomic location |
chr12+:5578418..5580254 |
Exon number |
1 |
Exons |
5578418..5580254 |
Genome context |
|
Sequence |
000001 TGTAATTGTA TTCATTGAAC ACTGAAGTCA GGAGAAGTCA GACCATAATG ACATGGGAGC CATTTTCGCA ACCAGCAGAC 000080
000081 TAGAAGGGGA GGGTTTGGAA GGGTGGCGGC AGAGCTTAGA CACCTGCTGC GAAGGGAGAG AAGTGGGGAC AGAAAGATGG 000160 000161 CCTGTGTAGA GTCCCATGAG AAAGACAGAA CTGCACTGGC AGGCATCTTT AGGGGCCCAG GTCACAATCA TGGGGCCGGT 000240 000241 GGACAGTCTC CAGGGCACTG TGATTGTCAC AGTGCACAGC CTAATGGGGA AAATTGCACA GCTTCACTTA AATATAGGTG 000320 000321 ACATATGGAC GTAAGAATTC ATGATTAATC TAGAACTAAC CCTGACCAGC AAGGCCGAAT GAAGAAAAAA TGTAGAAACA 000400 000401 CTGACCAAAC CTTCCTCAAA GGTCACAGAT CTTAGGGAAT GTGTCTCTCT TTCACATTTC AAAATAACAA CAATTTTTGA 000480 000481 AATATGTATT TTTTAACATT TAATTGTTTT ATTTGGGGAT AATTTTAGAC TCATGGCATC CACTGTTTTT TTAGTTACCC 000560 000561 ACATATTTGA TTCAGTAAGA TTCCCTGTAT TGATACAAAA AAAGAAGAGG GACCCTGTTT CCCTTTGACA CTGTTACTTT 000640 000641 TTCCTGAGCT CATTGTTTGT TTGTATTTTG TTTTGTTTTG GTTTGGTTTT TGGGATGTAG TCTTGCTCTG TCACCCAGGC 000720 000721 TGGAGTGCAA TGGCGCGATC TCAGCTCACT GCAAGCTCCG CCTCCCGGGT TCACTCCATT CTCCTACCTC GGCCTCCTGA 000800 000801 GTAGCTGGGA CTACAGGTGC CCGCCACCAT GCCTGGCTGA TTTTTTGTAT TTTTAGTAGA GATGGGGATT CACGGTGTTG 000880 000881 GCCATGATGG TCTTGATCTC CTGACCTCGT GATCCACCCG CCTCGGCCTC CCAGGGTGCT GGGATTACAG GCGTGAGCCA 000960 000961 CTGCGCTCGG CCTCCTGAGC TCATTTTAAG AGAGACTTCT GGCCTAGAGG TTTGAATGAG AAGAAGTTAT ACAGCTGGGA 001040 001041 TTCTTCCCTT TCTCTGATAT GAGGACAGGA GTTCTCTCTC ATCTCCGCCA AGAGCAGGAA GCTGGAGTAA CTGCCACAAG 001120 001121 CTCCAGGAGG GAGTGTCTAG AACATCCACG TTTTGCAGCA GGAAAACACC CCCTCACGCT GAAGTTTGAT TCCTGAATCC 001200 001201 TGTGTCGCAG TCTGAATGCT GAGGCAGAAG GGGACATCCG TGTTCCTGGG GCATTCCACT TGCAGTCCTG GCTGTAACCC 001280 001281 GAGTGAGCCA TCCGTGTAGT TCCTGTTGCT AAGTCTCCCC TGCCACCTCT TCTTCCCATG GCTGCAGGGC AGGGGGCCAT 001360 001361 GCCCTCCTCT TCATTTCCTG TCCCTGGGTG AGCGTGCCCC CTGCCTTCTC CCAGATCTCT GCTGTGGCAG CTTCACGTGG 001440 001441 GATTCAGCAC TGTGTCTCCT TCCCCTCTGC TCGGCCTGCC CATACCTGTC CAGCAGAGCT GTAAGACCAG AAGACAGAGC 001520 001521 ATTCCCCTTA TCTATGAAGT CAAATGCATG TGTGGAACAT GCCACCCAGC CTGCAGTCTC TCTACTATAA AATACTGCTC 001600 001601 ATAAGACAAA TGTGTGGCCC AGATGATTTC TGATAAAGTC TATTATTTTG AAATACATAT GTATGTCTCT CAGCCACTGA 001680 001681 TACACGCAGA AGCTGCACAT GTTGTCAACA CCTGCTTTGA GCTCCTTTCC TTCCCACCCT TCCTTTTGGC AATGCAAGTT 001760 001761 TCCATTCATT TTCTGCATTA CTGGTCTCCT CTCTTCTCCC CTACTACTAG ATCTTACAAT AAACATTTGA AATAGTT |
Predicted Small Protein
Name | NONHSAT026005_smProtein_1622:1834 |
Length | 71 |
Molecular weight | 8286.5829 |
Aromaticity | 0.171428571429 |
Instability index | 53.0328571429 |
Isoelectric point | 7.00872802734 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0522286992876 |
Amino acid sequence | MISDKVYYFEIHMYVSQPLIHAEAAHVVNTCFELLSFPPFLLAMQVSIHFLHYWSPLFSP TTRSYNKHLK |
Secondary structure | LLLLEEEEEEEEEEELLLHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHLLLLLLL LLHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiii iiiiiiiiii |