NONHSAT028795
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028795 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1803 nt |
Genomic location |
chr12-:56667800..56669725 |
Exon number |
2 |
Exons |
56667800..56668662,56668786..56669725 |
Genome context |
|
Sequence |
000001 TTTTAAAAGC TCCTTTATGT TCTCATCTTC TGAGAACAGA TGATAGGCAG CAAGAAGACA GAAACGTGGC ATAAAGGATG 000080
000081 ATCCAAGGCA AGAAAGGGGT CTAGTAAGCA AGGTCAGGAG GCCTAAAGAA ATTACTGTAA CCATGCTAAG AACAAGATGG 000160 000161 TGCTTCTGGC TGGGAAAAGG TACTAGCTGC TCACATTAGA TGGTCCTTCA GCTTTCCAGG AGCTCGCTCT TTGGGGCCAT 000240 000241 TGCTATTAAA GCTAGGTTGG AGTCATGGAG CAGAGCATAC AGGCATCATC AACCAGTAAC CTCTCCAGCT CTGTGGATGA 000320 000321 GTGAACAAAA GCTGGTAATG AGATTAGGAT GCtttttttt tttttttttt ttagatggag tcttgctctg tcgccaggtt 000400 000401 ggagtgcaat ggcgcaatct tggctcactg caacctgcac ctccaggttc aagtgattct gctgcctcag cctcccaagt 000480 000481 agctaggact acagatgtgt gccaccatgc ccagctaatt tttgtatttt tagcagagac ggggtttcac catgttggcc 000560 000561 aggatggtct tgatctcttg acctcatgat ccacccgcct tggcctccca aagtgctagg attataggcg tgagccactg 000640 000641 tgcctggccA AGATTAGGAT GTCTTTTACA AGAGTTTAGG TATAACTGAC TGGCTATAGG CTGGCATGAG CCCATAACTA 000720 000721 GGCTAGTAAG TGGCAAATAA GAGAACAGCA AAGTTTCCAT AATCTGCCCC TTCTTTCTTC CCTTGGCTCT CCCTTCTTAC 000800 000801 TTCCCCACAG TGACCATGAG GGTGGCAATG TAAGTGCCCA TACCAGCCAT TTGGTGGGCA GTGCCCTTTC CGACCCTTAC 000880 000881 CTGTCCTTTG CAGCAGCCAT GAACGGGCTG GCAGGGCCTC TCCATGGACT GGCAAATCAG GAAGTGCTTG TCTGGCTAAC 000960 000961 ACAGCTGCAG AAGGAAGTTG GCAAAGATGT GTCAGATGAG AAGTTACGAG ACTACATCTG GAACACACTC AACTCAGGAC 001040 001041 GGGTAAGCAG AGATGCTTAA CGACTAGGAA AGAAACCAAG ACACAAGTTC TGCAATTTGG AAGAATTAAG AAAAGAATGA 001120 001121 AAGAGGTCCC TAAATTAGAG ATTTTTTTTT CTTCATTTAT CTACCTTGAA GAATTTAGAA AAGAATTTCT AGGTgggcac 001200 001201 aatggcatgc acctgtagtc ccacctactt gggaggctga ggcaagagga ttgcttgagg ccaggagttt aaggctgcag 001280 001281 tgtgctaaga tcactcctgt gaatagccac tacactccag ccaggacaac acagcaagac cccattctct aaaaaaCAGT 001360 001361 TTTAAATAgg ttgagtgtgg tggctcacgc ttataatctt agcactttgg gagtccaggg tggatggatc tcgtgagccc 001440 001441 aggagtttga gaccagcctg agcaacacag accctatctt tttttttttt ttttttttaa agacagtctt gctcttgttg 001520 001521 cccaggctag aatgcagtgg cgcaacctca gttcactgca acctccgcct ctcgggttca agtgattctc ctgcctcatc 001600 001601 ctctcgagta gctgggatta caggcatgcg ccaccatgcc cggctaattt tgtattttta gtagagacgg ggtttctccg 001680 001681 agttggtcag ttggtcaggc tagtctagga ctcccaacct caggtgatct gcccacctca gcctcccaaa gtgctgggat 001760 001761 tacaggcatg agccaccgca cacggccaga ccccatcttt acc |
Predicted Small Protein
Name | NONHSAT028795_smProtein_374:481 |
Length | 36 |
Molecular weight | 3826.5364 |
Aromaticity | 0.0 |
Instability index | 65.9628571429 |
Isoelectric point | 6.68548583984 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0453857218564 |
Amino acid sequence | MESCSVARLECNGAILAHCNLHLQVQVILLPQPPK |
Secondary structure | LLLHHHHHHHHLHHHHHHHHLLLLLEEEELLLLLL |
PRMN | - |
PiMo | - |