NONHSAT029820
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT029820 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1918 nt |
Genomic location |
chr12-:89932993..89941782 |
Exon number |
6 |
Exons |
89932993..89933426,89933885..89934080,89935179..89935549,89936796..89937105,89939044..89939110,89941243..89941782 |
Genome context |
|
Sequence |
000001 CATTTTTTTC TTTTTATTGA ATAAGAATAC ATGTATAGAA AAGTACAACT TTCATAAGTG CACAGCTTGT TGTAATTTCA 000080
000081 CAAAAAAAAA TTAACTCAGG TAACCAATAC CCACAGGAGG AAACACAACA TTACCAGCCC CTAGATGCCC CCTCATGCTT 000160 000161 CCCTTCCTGA CTTCTGATAT TACAAATTAG TTTAACACAG TTTATTTTAA AAACACCATA TTCAGATTTC AATAGTTTCA 000240 000241 GTAATGCTTA TATAAAAAAC TGACTTTAAA AAATTGATCT GATTTCCTCC GTCACTGACA AAGACAACAT AAAAATGGAA 000320 000321 CTTGTTCTAA AAAAGCACAA ATAGAAGGAA TTTATCAGAA GCTCACATTT CAAGATAGAC TTTCTGGCAA AAATCAATTA 000400 000401 AGTATAGACA TTGGATATAT CTACTTCTAC CTCATGTACA TTTAGGAAAG ACCATGAAAT ACATTACTTA TCAGAAATAT 000480 000481 ATGTCAAGGG CTAAGCTATT GCTTTGTTTC CTTATTGGTT TGCAATATTG ATGCTGTTAT GCTGCCTTGC ATCCTGGTGG 000560 000561 TGACTAAAGT TACAGTTTAG GGTCCAGGAA GTAATATGAC TGAAATAGCT TTGATTATTT TAATGGTTAT TCTTGCAAAT 000640 000641 CAATCCAAAT GCAGTAAATA GAAGTGCAAA GGGTAGATTT CCAATTCCAG GAGCAATCCC TTTACTTCTC CAGGCTTCTT 000720 000721 CCTCTAGCCG AGGGCTCTTT CCTTGAAGTC AGTTTCACCC TGATCTTTTG ATGCACCGCC TTTGGGATGA GTGGAGAGAA 000800 000801 ATGCTTGAGC TCCCCCTAGA GGATGGCGGT GCTCCTAACT TCAAAACCTT CCATGACGTC CCAGGACCCA GGATTAAAAT 000880 000881 GTTTTCTGAT ATTTTCTGTT TGTTCCTCCA AATGTTTTAC ACCAGCTAAA AATATATGTG ACATTTATGT TAACAAAAAA 000960 000961 GCAACATTCA TAGAGTGCAA TTAGAAGACA ACTTCATCCT TTTCTTCTTC TGCCCATTCA AACTCACATA AAGGGTTACT 001040 001041 TCTTCCTCTG CCTCTGGATA AAACCTTGGT GGGGTCCAAG GGGGAGGGAA GGTCCTATCC TTATCTATTC TTCTGCTGAG 001120 001121 GATAAAATGT CTTCCAGTCA CCTCTAATTA CAAAACAGTT TTATTTCAGT AATTAAAATA TCCATTTCTA TGTCATAGTC 001200 001201 AAACCTCTGA AATTCATTTA ACATGAAAAC TTTTCTCTCC TGACTCCAGC CACTAAAAGC TACAGTGGGT GTTGGGTAGA 001280 001281 GGAGGAGACT GGTTAGAGAG GCAAGTGATT TATTCTCCGG CTCATGTTTC TATATGGAGG CATTTTCCAA GACTAACAAT 001360 001361 CCTGGCTTCT CTCTTTTGGC TTTCCTTGTC CTCCGTGGGG CAAAGTTATC TGGAAAGTCT GGAAGGGACC AGGCACACGC 001440 001441 AGCTCAGCCT TTGCTGCTCT CCCCTCTCTT CACACTTGTG TTATCTGAGA GGGGTTGGGG AGGGGAGGTA GTAGCTGCTC 001520 001521 CCTTTAGATA AAGCATGTAC TTTCTAGCTC TCCCCAGTTC CCAGCTAGTT AGGGTTGCTG CATTTAGCAA ATATGAATGC 001600 001601 AAGAAGCCTG TTTAAATGTG CAGAAAAGAT AAACAACTAT TTTATTTTTA CTTTTTAGTG TAAGTAGGTC CAATGCAACT 001680 001681 CATGCAATTC AGTTAAAGCA CCCTATATTG TATCTGGCAA CCCTACCTCA ACCAGTTTTG TTATCCACTT GGGCTTAGAA 001760 001761 GGTAAGTGAG CTTTTTACCC TTGTAGTCAT TTTTACTTAT TTTTATAAGT ACAATACCTA ACATACTACC TGGCCCATAG 001840 001841 TAAGATGTTC AATAACATTG ATGGAATGAT TATATAAACA TAGCCTGAAG ACCAAAATCA TATTCCATAG AAAATATC |
Predicted Small Protein
Name | NONHSAT029820_smProtein_770:928 |
Length | 53 |
Molecular weight | 6294.2425 |
Aromaticity | 0.173076923077 |
Instability index | 52.4309615385 |
Isoelectric point | 5.04132080078 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0434110581169 |
Amino acid sequence | MHRLWDEWREMLELPLEDGGAPNFKTFHDVPGPRIKMFSDIFCLFLQMFYTS |
Secondary structure | LLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEEHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |