NONHSAT030466
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030466 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3304 nt |
Genomic location |
chr12+:106533813..106537368 |
Exon number |
3 |
Exons |
106533813..106535694,106535800..106535939,106536087..106537368 |
Genome context |
|
Sequence |
000001 CCTTTCACTG AAAGGGCCAG ATCCTGGCGA TGGTGACAGG AACGGTACCC CGCACGGTAA GGGTCAGGCA GGAAGGGCCT 000080
000081 CCCACCGCGG CGTGGCTGCC GCCGTTCTAA GAAGAGACCA TGAAAAATAA GGAAGAAGGC TAGAGAAAAA GAGGTCTTAG 000160 000161 GGAAATTTTT TTTTTTAACA AGTGGTGCAA TGTACCAGAC TAGGGTGGGA AGAGTGAAGG CTGAAGAAGG TCTGGTGTTC 000240 000241 TGCAGATCGC ATGGCGGTTC TTTTCCACCA GTGGACCTCA CTGGGGCCTC CTCTGCAGCT CTCAGGTGCA GCCCTTCCTC 000320 000321 TACATTCCCG CCGCCTTCAT TCCTGTCTAC CCCTGGTCAC CTTACCCCGG ACTCCAGCAA CAGCCCGCTC TCCCCAACCC 000400 000401 TCCCCGGGAG CCTCCTCACT GCTGCCAGAG TAATGGCCTG AAACACTGCC CTCATCCTCC ACACGTGTCT CTGCTGTACT 000480 000481 CTGACGCGTG ATATTCTTAC CTGTCCAAAC TTTCCTTCTA CTGATATTTC ACACAAACTT CCCTGCCCCT TCTTCCCTTC 000560 000561 CCCAGGAGCA ATGACAGAAC ACAGACACAA AGGCGCATCA TGCCTATTCA ATTCCTATTC TGTCCACCGC ATTTGCAGGG 000640 000641 CCTCCCTGCC ACCCACCCCC ATCCTGAAAC TGTTCTGCTT CTATACAGTT TGTGGACGTT GTGCCTATAG ATCCCACagt 000720 000721 caggatgagt ggcatgcagg ttgagtcctg gcttcccaga ggattggctg tgtggccttg gtcaaatgac ataacctctc 000800 000801 agagcttcgg ttttctctta agatatggat TTAGCAGATC TATTGTAGAG ATAAACACAT TGTGTCTACA GTAGTATTTT 000880 000881 Aaaatatttt ctacttcttc ccctcccctg cgatgtggta gaaatccact accccatcct cttgaagtta gatgagacca 000960 000961 tcggacttgc ttaggccaat ggaatgagag cagaagtgat tgtgttgctt tcacttggaa cctttaggag ccagtgagca 001040 001041 aatccccatg tcttcttttt cctatcttga caatcatggt ggtacaaagt tggagcctcc ccaagccagc ctgagtctct 001120 001121 gtgtaaagat ggcagaaaat cccagccaat ctgcattgga aaagtagtgt cagcaaatat taaactttat ttatgttaag 001200 001201 tcagtgggat ttgttaaagc agcataacct ggcttattct ggctgataGT GTTACTCCCA GATATGTGGG ACTTCATCAG 001280 001281 TATCTATTGA ATCAACAGCA TCATCTACCA TAGGCTGGTA CTGTTTTATG ACAGTAAACC CTCctctgta aagtagctgt 001360 001361 ttacaatccc tattttcaat tgaagaaacc gtatcagaaa ggttaagtaa tttcccagag gttacacagt ttgtaaatgg 001440 001441 caggaccagg atttaaaccc tacctgtcca gttccaaagc tcccccttct cctttcatat atgccatgct ccgtctcCtt 001520 001521 aaatgggaag gatgaaaaac acccagtaca atgcctagca cacagtcatg cccaggcact gggagttcCT CTCCAGACTG 001600 001601 AATTCCTACC ACGTTTATAA TTGGAACCAC ACTTCAGCAC AATGCTATCA GGCATTGTGT GTGAATGTTT TCACATCGAT 001680 001681 AAAGCATTTT CTCCAACAAG AGCCCAGGCT CCTtgattaa gagcttcaga tctagaggca gagtgactag gttcaaatcc 001760 001761 ctgttccacc tcttatgatc atcttggata attgttttcc ccctctatgc ctcagttctc taatctgcaa agtggcgatg 001840 001841 gtaaCTTtca tgtgcgtctg tgtgaagaga ccaccaaaca ggggtaggta aaggaaaatt acagtcaaag aaaggggggt 001920 001921 tgttctctgg cgggcagggg tgggggtcgt gaggtgctca gtgggggagc tttttgagcc aggatgagcc aggaagagcc 002000 002001 aggaaaagga ctttcacaag gtgatgcgat ggcttggctt gggcacagag gcctgacaGT AACAATGTAT GTGGTATTAG 002080 002081 CAATTACGCC aataacacat cccacagggt tggtatgagg attaaGGGCT AGACTATATC CACTCAATAA ATCGTGGATA 002160 002161 TTAATACGAT ACTTTTCATC TTCCATAGCT CCTACTAGAA TTTGGAGCCt tttttttttt gcgatggaat ttcactcttg 002240 002241 tcacccaggc tggagtgcaa tggcacgatc ttggctcact gcaacctccg cctccctagt tcaagcaatt cccctgcctc 002320 002321 agcctcccaa gtacctggaa ttacaggcat gtgccaccac gcccagctaa tttttttgta ttttcaatag agacgaggtt 002400 002401 tcaccatgtc ggtcaggctg gtctcaaact cctgaccaca ggtgacccac ctgcctaggc ctcccaaagt gctgggatta 002480 002481 caggaatgag ccaccgtgcc tggccTGGGG CAATTTTAAG CAGTTTAATC ATACTGCTTG GTTAGACTCT GATTTCTGGT 002560 002561 TTTGTTCTTG GATACAGGAC AGATGTAGTA ACATTGGCAC TTGAAAGTGT GACATCCACA CTATCCTACA TCTTTTATTT 002640 002641 ACATAAGGCT CATTACTGGT CCTTCACTGC ACTTTCTATT TTCAAAGCAA TTTAAAAGAA AGAAGGTATG TTCGCTTTCT 002720 002721 CAAGAAATCG TTGTTCAgga atcctgtcat tcaggcagca tagatgagct tggaggacat tatgttgagt gaaataagcc 002800 002801 aggcacagca agacaaatac cacatgttct cactcatatg tggaagctaa aaaagttaat ctcattgaag tagagagtag 002880 002881 aattgtggtt actagaggtt gggggagggg acagggatag ccaaaggttg gttagcgagc acaaaattac aactagataa 002960 002961 gacaaataag tgctcatctt tgatagcact gcagggtgac tataattaat aatttaattg GGAGGATACA ATAAATTAGT 003040 003041 AATTTATATT GTGTATTTAA GAACATACAG TAGAatatta tattgtatat attcattatt gattgtatat atttatttat 003120 003121 tgtatgttta taatttattg tatataaatt atatacaata tattgtctat attaataatt tattttatat attcagatag 003200 003201 ctagaagagc agattttgaa tgttcccaac acaacaaaat gatatatgtt tgctatgtga ataaccctga tttgatcatt 003280 003281 acacgttgta tgcatgtatc gaaa |
Predicted Small Protein
Name | NONHSAT030466_smProtein_599:709 |
Length | 37 |
Molecular weight | 4127.9345 |
Aromaticity | 0.111111111111 |
Instability index | 61.2694444444 |
Isoelectric point | 6.20391845703 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0250839074368 |
Amino acid sequence | MPIQFLFCPPHLQGLPATHPHPETVLLLYSLWTLCL |
Secondary structure | LLEEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |