NONHSAT031087
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031087 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4019 nt |
Genomic location |
chr12+:120115160..120119424 |
Exon number |
2 |
Exons |
120115160..120117806,120118053..120119424 |
Genome context |
|
Sequence |
000001 TGTGCTGAGA CGAGGAATGC ACGTGTACAC ATGCAGGTGT CCCTACAGTG GTCCCTGCCG GGCTGCCAGG ACAGGGTCTC 000080
000081 AGTGCTTGTT ACCCTACAGG GTACCCAACA GGGCTTGCCT TTCTCAGGTC ACCTCCTGTG CTGGGAGTGC CCCTGCAGCT 000160 000161 GGGTAGCCAT CCTGGTATAG GCCCAGAAGA GGCCAGTGGT AAGGACAGCA CGCCTCAGCT GGCAGGGCCC ACCATCTTTC 000240 000241 CAGCACTGAG TTGGCAACAG TCTCAAATAG GTCACAGGTG AAGAGTTTCA AGGACATGTA GCTTCTGCCT TAGAAGCACT 000320 000321 TAGTTGACAC TGCTTCCCTT AGCTCTAACT TTACAAAGGT TGGTGGGTAA GATGACTTTC AGTGCCCTCC TAAGCTAGTG 000400 000401 AGGtttgttt tttttttttt ttttttttga gacggagtct tgctctgttg cccaggctgg agtgctgtgg tgccatcttg 000480 000481 gctcactgca agctccgcct cccgagttca cgccattctc ctgcctcagc ctcccgagta gctgggacta caggcccccg 000560 000561 ccaccacgcc cggcaaattt tttgtatttt tagtaaagat ggggtttcac catgttagcc aagatggtct cgatctccta 000640 000641 gcctcgtgat ccacccgcct cggcctccca aagtgccggg attacaggcg tgaaccaccg tgcctggccA GGTTTTGTTT 000720 000721 TTTCTAGAAA AGGGAGGCAT CACTAGCCAT CTTCTCTGAT GGAGACTGCT GCTGGGAATA GACAAGCTGA GAGTGGCCCA 000800 000801 GGGGGCTGGG AATATGAGAA TGTCAGGACC CCTCTGTCCA AGGTAGCACT AAGCTCTAAT GTAAACTGTG GTTACAGTTG 000880 000881 TCACTACTAA AGGGTTaaca tttattttgc cccaaactaa tcttaagtgc ttttcgtgta ttcttattca agcctcacaa 000960 000961 caaccatgtg aagtaggtgc aattattacc cccattttag ggatggggaa actgaggcac agagCAgtag ggagaacact 001040 001041 taaaatctac tgtcttagag attttcaaga atacattgtt actaatagtc accgtgttgt acagtggatc tcttgaacgt 001120 001121 attcctcctg tctaactgaa atgttgtatt ctttgaccag catctcccta cccccaccac tcctagccgc tggcaaccac 001200 001201 cactctactc tctacttctg tgagttcgac tttcttggat tccacataag tgacatcaca tgggatttgt ctttctgtgc 001280 001281 ctggctcatt tcacttaatg tcctccaggt ttatccatgc tgtcacagat gacaagattc cttttgtaag gctcagcagc 001360 001361 actgcattgt gtatcagtac ctcatttctt tatccattca tccattgtgg acacctacgt tgattccacg tcttggctat 001440 001441 tatgaataga gctgcagtga acgtgggagt acagatatct cgacatgctg atttcatttc cttggagtat ctaccctgta 001520 001521 gtgggattgc tagaccatgt ggtaatttta gttataactt tttaggaacc ttcatgccat tttccataat ggttgtacta 001600 001601 atttacatgc ccatcagcag tgCACTAaaa gtagctttta agtgttctca ccacaaaaac atggtaagca tgttctgcgt 001680 001681 gtgttgatga gcttgattta gccattccac aatgtgtcca tatttcaaaa caacatattg tacatggtaa atatacataa 001760 001761 ttttatctgt caatCTTTGA AATTGATTAA TTTTTTAAAA ACCCCTCTTA GGCTCACACA GCAACTGGCT GAGCCAGCAG 001840 001841 TCACATCAGG CTTGGCTGGT GCCAGATCCT TGGTAGTTGG TGCTCTCAGC AGCCACCCTG AATGGCCTCC CAGCGGGAGC 001920 001921 TTGCTGAGTA TTTGTTGACA CAATGATTGG CCCAGCCTCT GGGATCCTAA GCCTACAGCA GTTGTTCTAC ACTTTTTTCC 002000 002001 ATTTGAATTG CATTTATAAC AGTTGGGGGT ATACAATGAA AAAATaaatc ccgatttctg gcttctctta aaacatagga 002080 002081 aggtgcggcG GGCAGCTCTG AGTGCCAGCC CGGTGGCAGA TTTTCCAGAG TAGTGGTGTC TTGCCCAGGT ATCCGTTTCA 002160 002161 TTCTTCAGGT TCATTGAGTC TTACAGATAC AAGTTTTGAA TCCATTGCTC AGGAGCGTTT AGTGCAGATG GTCTCTTCCT 002240 002241 GTGTTCTCTG AAAGTGCTGT TAATAGCTGC TTTCTTCCTG CCCCACCCTC CATAAGAGGA CAGGGCCGTG GCCCACACTT 002320 002321 GAAAGAGGCC GGGGTAAATG CCTGGCCAGA GACACACACC GATGCCTCCA GCAGGCATGC AGGGAGCTCC CTTCAGGTCA 002400 002401 GAAGGCGTGA CCTTCATCTC ACCTGTCGTC TTGGACAAGC CCTTGCGCTG CCTGATTTGG GAAGAGAGGT CGGCCTGAGC 002480 002481 GCTGCCTCCT GTCCTTTGAT ATCTGGCACT GGGAAGTAAA GGGGAGAATC TTGGTTTCCA AATCCCAAAT GCTCACCGCT 002560 002561 GCCTTTGTTC CCTCACAGTG TGATCCAGCT TTGCTTCCTG AGCCCAATCA CGTCATGCTG AACCACCTAT ACGCGCTGTC 002640 002641 TATCAAGGAT GGAGTGATGG TGCTCAGCGC AACCCACCGG TACAAGAAGA AGTACGTCAC CACCTTGTTA TACAAGCCCA 002720 002721 TATGAAGAGC TGGGGGCGGA TGGTGGCCCA GGAGACAGCA CACCACCAGG CTCCACACGT GCATGCTTTC CCCAAGAGGG 002800 002801 AATGGACTGT ACATTGCTCA TTTCACACTC TTCAGAAGAC ATTTCATACC TGCCCTGGTC CTGCTTGAAG GTTTGTCCAG 002880 002881 GCAGAGCAGC TCCTGCAGCG CCTCGGTCTG TGACAGTCCT CCTAGCACCC CCATGGCTTT GAGCCTCGGG GACTCATCAA 002960 002961 GTCCAAGAAA AGAGGGAGGG GTGGCAGAGG ATCTGCAGCC CTGGCCCCGC GGTGCATGAG GCTGGGTGCA GTTCTAAACC 003040 003041 TACATTCTCG ATTTTTCTTA AGCCAAAAAT GAATGCTAAC TCCTTTGCCA GTAAAATTCT GGGAAACAGG GACTGAGGCC 003120 003121 ACACATCATT TCCAGTCATC TGTGTGTTTT TAAGGCCAGC CACTTGTCCC TGTTGAGGCC TGGCTATGGA ACTAAATACA 003200 003201 GTGTTGGTCT TGCCTGTCCT TCAAAATCAA CAACAGATTG TCTCTCGGCT CCAGGGAGGT GTCATTTCTA TAGAAATTAG 003280 003281 AAGCTTTCTG ATTTCTAGAT GAGGTTTTAC AATTGTTTCT TACAGTCATG TGCACTAAGT ACTCTTTTTG TAAGCAGAGG 003360 003361 TGGCTGGCTC TGCAGCCTTA AGGCCATTTT TTAAGTCACC ACGTCTAGAA GTCACATGAA CTCTGCTCAG CAATAATCTG 003440 003441 TTCTCAGAAC AGACTTTTCA ACCTGCTGCC GGATTTCTCC ATTCAGCTGG ATGATCCTCA GGACTGACCA GTTAGCTGGC 003520 003521 AGGTTGTCCA GCTTTTTATT CCAGTCATAA TAGGTGACAG TGTTAACCGT GAAAACTTGA GAGGCACTCT GCCCTCTTCC 003600 003601 CTATAAAATC ACACAGCGTG ATTTTACAAG GTCCCGTGGC ACCTTGCTCA GGACCTCTGC CCCTAGTTAG CAAGACTGCA 003680 003681 GCAGTTGCTG TTGCTTATTC TGAAAGGAAT GTAGAACTTG ACAGCAGCCT TCTGAGTCTG GGTCAGGAAG ATGTCCTTTG 003760 003761 GACCAAAGCA GACTTCTTTA TACGCAGCTC AGTTTCCCGG GAGTCGCCAC AGATGTACCC ACTAGCCCAG GTTGCTGTGA 003840 003841 GTCAGCGGAA GCTCCCGTTA TGCCCTTTGC TCCTGGTGGG AGAGGGAGGA GTGAGCTCCC TGGGTTCCAG TATTTACTTG 003920 003921 GTATACCTGA GTTTGGGGGT ACCCTTTTTT GTGACTTTTC AAAACAGTGA ATTACTGTCA CCTTGATGGA CAAGTTTCAA 004000 004001 TAAAACTTTG TAAAAATAA |
Predicted Small Protein
Name | NONHSAT031087_smProtein_3812:3985 |
Length | 58 |
Molecular weight | 6100.1478 |
Aromaticity | 0.105263157895 |
Instability index | 46.7771929825 |
Isoelectric point | 5.89471435547 |
Runs | 14 |
Runs residual | 0.0916666666667 |
Runs probability | 0.0165669871552 |
Amino acid sequence | MYPLAQVAVSQRKLPLCPLLLVGEGGVSSLGSSIYLVYLSLGVPFFVTFQNSELLSP |
Secondary structure | LLLHHHEELLLLLLLLLLEEEELLLLEEELLLEEEEEEEELLLLEEEEEELLEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooo |