NONHSAT032130
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032130 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2186 nt |
Genomic location |
chr12-:133416938..133424388 |
Exon number |
4 |
Exons |
133416938..133418182,133419597..133419669,133420613..133420720,133423629..133424388 |
Genome context |
|
Sequence |
000001 GTTCCCACAG CTCTCGGTGA GGGCTTCTTG AAGGTGCCGC CCTTTAGCAA GACCAGGGCC TTTTCTCTGG TCCCTGTCTC 000080
000081 TTCTGGCCAT TTGCCTTCCC ACGTCTAGGA AGCTACCTCG GTTTCTAGGA TTTACATATG TTTAACATGC GCATTCGCCC 000160 000161 TCCTGCCGAG CACTTTGCTG ACAGCACACA CAATGGTGGG GCCTTGAGGC TTGCCACAGA CACACCTGGC AGGCGCCCGC 000240 000241 TCAGCCCCAC ACTCTGCTTT GATGCCCACA GAAGGAGCTC AACAGCTCGT GTGTGTTTGA AGGGCACAGA GAACAGATGC 000320 000321 CAAGTCCTCA GCTTTTCTTG TGCAACAGCC TGGGCTCGTT GCTGGGCTGT GTGCACTGTG GCCTGGCTTT CATGTCTCAT 000400 000401 TCACACCTGG GCTGTGTAGG TCTTGGCAGA ACTTTTGAGA GACTCTGGTA ACTGTTACAC TGGAACCTTT TGGGACTTCC 000480 000481 AGGAGGCTCT TGGACAAGAC TTCTCGTGCT GCAGGCCGTG AACGTGCAGC CCTCTGCAAA TGCCACTTAT AAGGGTCTGA 000560 000561 GCTTTGGCTT TGCACACTTT CAGGGGCCTT TTATGAAATG TTTTCTCTCG TTATTTCAGT GTTTCTTCCT CTAAACGAGT 000640 000641 ATTTCTTATT CCTCTCTTTT TTTGCGTCAC AGAATTACCT GGCAACCAGA GGTTTGACAT GGAAAAACAT GTTGACCGAG 000720 000721 AGCCTCGTGG CTCTCCAGCG GGGAGTGTTT CTGCTGTCTG ATTACAGAGT CACGGGAGAC ACCGTTCTGT GTTACTGCTG 000800 000801 TGGCCTGCGC AGCTTCCGTG AGCTGACCTA TCAGTATCGG CAGAACATTC CTGCTTCCGA GTTGCCAGTG GCCGTAACAT 000880 000881 CCCGTCCTGA CTGCTACTGG GGCCGTAACT GCCGCACTCA GGTGAAAGCT CACCACGCCA TGAAATTCAA TCATATCTGT 000960 000961 GAACAGACAA GGTTCAAAAA CTAAGCATCC AGAGGCCCTG AGCAGCTTTC AGCACTGGAG GTGAAGAGAG CGTGTTTTTA 001040 001041 AAATACAGAG ACAAGCACGT CAAGGTGTTT TCACAGCCCC CTGAGGGAAG GGACGCAGGG TCTCCGACAG GTGCTCTGGG 001120 001121 GTGACTCTTC TGTGGAGCTT TACCCTCTGA GTGAGACCCT CCCCAGAGCC CCGGGGGCCG CAGCCCGCCC TCCTGGTGAG 001200 001201 CGCTGGGCAG GGCTCGTGGT GGCATCAGCA GCAGAGACGA AGCCTTTCTG TAACATGCGG CCGTCCCGCC GAGAGGGGCA 001280 001281 GTTTTGCTCT TTTGTACATT TTCCGAAACT ACAGTTAAAG CAGAAGTCTG TTTTTAGGAA AAGTTTCAAG GGAGAAGGGC 001360 001361 AAGTTTATCA AAAACATTGT TTCAGGAGAA GGGAGCATAA GTTTACAGCC TACAGGACGT ACACAATATC CTGCTGCTGG 001440 001441 GAAAACCACA GCATTTTATC TATTTTTTAT TTTAATAGGT TTGGTGCTTA TCTTCTAATA AGATTTAAAT GTCACAAACT 001520 001521 GTAGCACaaa taatataatt tataatttaC AAATTGACTA AAATTGGGTA TAGTATGGTA TTTGAAAGAA TAAGCATATG 001600 001601 CTTCTGTTTA TTAAAAAAAG AAACCTTCCA ATGTCCAAAA CTGCTAACCC TCGACGTGGC CGCCAAGTTA GTCGCTCCTT 001680 001681 GCTAACCGGT GAGTGACCGC GGCCCCGAGC CTGGGGCTGG ACGCAGGTCC CAGGACATGC TGCTCCCTTG TGTGAGTGAC 001760 001761 CGCGGCCCCG AGCCTGGGGC TGGACGCAGG TCCCAGGACG TGCTGCTCCC TTGTGTGAGT GACCACGGCC CCAAGCCCAG 001840 001841 GGCTGGAGGC AGGTCCCAGG ACGCGCCGCT CCCTCATGCT GCCCGGGCCC TTCCTCCAAG ACCCTACAGA GCCTGAGGGG 001920 001921 CACCTTGGCT TCCGCCTGTG CTAGCTTTGC CATGTCATCT GGAATAATAC TTGAAATTTT GATTTTTGGA AAAAAAAGTT 002000 002001 TTTTATCTTT TGTTGAAATC ACCTGTTATC CTTGTTTGTA AACTGATAAC TTTTTTGCTT CTTCTCAGGA ATACAGTTTT 002080 002081 CAACTGTTGT CTTGCTCTTG ATAGAAACTG AGAAGCAGCA ATCTGTATTT GTGGAGGAAA GTCCTCTCTT TTGCATATTC 002160 002161 TAATAAATGA GCCGCGTTTG CTCCTC |
Predicted Small Protein
Name | NONHSAT032130_smProtein_137:418 |
Length | 94 |
Molecular weight | 10361.8793 |
Aromaticity | 0.0860215053763 |
Instability index | 52.9430107527 |
Isoelectric point | 9.34027099609 |
Runs | 13 |
Runs residual | 0.00886101154918 |
Runs probability | 0.0401872460696 |
Amino acid sequence | MFNMRIRPPAEHFADSTHNGGALRLATDTPGRRPLSPTLCFDAHRRSSTARVCLKGTENR CQVLSFSCATAWARCWAVCTVAWLSCLIHTWAV |
Secondary structure | LLLLEELLLHHHHLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLE EEEEEELHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiTTTTTTTTTTTTTTTTTTooooo |