NONHSAT032274

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT032274

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1500 nt

Genomic location

chr13-:19997019..20110903

Exon number

15

Exons

19997019..19997304,19999087..19999157,20000565..20000657,20004608..20004687,20006613..20006718,20010366..20010446,20012232..20012293,20038596..20038660,20039395..20039458,20039605..20039704,20048054..20048215,20066990..20067043,20067588..20067641,20077364..20077417,20110736..20110903

Genome context

Sequence
000001 aatgatcgaa gcagtacaaa tcaggggaga acgtgcccaa gacctggaga actgataata aattgtggtt tatccttgca 000080
000081 atggaacact atatggaagt gaaaatgatt gaaatagagc tatacacatc atcacagaca aatttcagaa acaacgctga 000160
000161 gtgaaaaaTC CACCCACAAA TGAATTATCA GGAGTGAACC CAGAGGCACG TATGAATGAA AGTCCACAGA CAAACGAATT 000240
000241 TAAAGGAACA ACCGAGGAGG CACCTGCGAA AGAAAGCCCA CACACAAGTG AATTTAAAGG AGCAGCCCTG GTGTCACCTA 000320
000321 TCAGTAAAAG AATATTTGGA GTTTTCCTGG TCTTACTGGA TGTCACTCTC CTCCTTGCCG ACCTAATTTT CACTGACAGC 000400
000401 AAACTTTATA TTCCTTTGGA GTATCGTTCT ATTTCTCTAG CTATTGGCTT ATTTTTTCTC ATGGATGTTC TTCTTCGAGT 000480
000481 ATTTGTAGAA GGATGGACAC ATTTAGTTCG ACTTCTACGA CTTATTATTC TGATAAGAAT TTTTCATCTG CTTCATCAAA 000560
000561 AAAGACAACT TGAAAAGCTG ATGAGAAGGC TGGTTTCAGA AAACAAAAGG CGATACACAA GGGATGGATT TGACCTAGAC 000640
000641 CTCACTTACG TTACAGAACG TATTATTGCT ATGTCATTTC CATCTTCTGG AAGGCAGTCT TTCTATAGAA ATCCAATTGA 000720
000721 GgaaGAACCG GGACTATGGT TTGTGCCCTC CTTATTGCCT CCGAAATATT TTTAACTGCC GAGGAAAGCC TATATTATTT 000800
000801 TGGAGAAAGG CGAACCAATA AAACCCACAG CAATAAATTT CAGGGAGTAG AAACTCCTTC TCAGAATAGA TATGTTGGAT 000880
000881 ATTTTGCACA AGTGAAACAT CTCTACAACT GGAATCTCCC TCCAAGACGG ATACTCTTTA TAAAAAGATT CATTATTTAT 000960
000961 TCGATTCGTG GTGATGTATG TGATCTAAAA GTCCAAGTAG TAATGGAGAA AAAGGTTGTC TTTTCCAGTA CTTCATTAGG 001040
001041 AAATTGTTCG ATATTGCATG ACATTGAAAC AGACAAAATA TTAATTAATG TATATGACGG TCCACCTCTG TATGATGATG 001120
001121 TGAAAGTGCA GTTTTTCTCT TCGAATCTTC CTAAATACTA TGACAATTGT CCATTTTTCT TCTGGTTCAA CACGTCTTTT 001200
001201 ATTCAAAATA ACAGGCTTTG TCTACCAAGA AATGAATTGG ATAATCCACA TAAACAAAAA GCATGGAAAA TTTATCCACC 001280
001281 AGAATTTGCT GTGGAGATAC TTTTTGGCGA GAAATGACTT CCAATGATGT TGTAGCTGGA TCCGACTAAG TATAGCTCCC 001360
001361 CCTTCCCCTT CTGGGAAAGA ATTATGTTCT TTCCAACCCC TGCCACATGT TCATGTGTCC TAAGTCTTCC TTGATGATGC 001440
001441 ATCTATATTT ATATATGTTT ATATATGTTC TTCATAAATC TATTAAATAT ATATAGATAA
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Predicted Small Protein

Name NONHSAT032274_smProtein_215:385
Length 57
Molecular weight 6892.9071
Aromaticity 0.107142857143
Instability index 51.8857142857
Isoelectric point 10.0108032227
Runs 11
Runs residual 0.0431303669009
Runs probability 0.0195596666185
Amino acid sequence MKVHRQTNLKEQPRRHLRKKAHTQVNLKEQPWCHLSVKEYLEFSWSYWMSLSSLPT
Secondary structure LLEEELLLLLLLLHHHHHHHHLEEELLLLLLEEELLHHHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -