NONHSAT032281
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032281 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3528 nt |
Genomic location |
chr13-:20241349..20244877 |
Exon number |
1 |
Exons |
20241349..20244877 |
Genome context |
|
Sequence |
000001 TATACAGTAC AAGTGTTAAA ATGTCTATAT CTAGCAAATT TTGCTTAATT CAGTCCAAGG AAATAATTCT AACAGTGGCA 000080
000081 AAGTAATTAT GTACAAAGAA TCTTTGAGAT CATTAAGTAT TTATATTCAG AACAATGCTG GCCCTAAGAC AGTATGGTGA 000160 000161 GCACAATTTA AGGCAAAAAA TAAGCAGGAA AAATTCCTAC TGACAAAACT TAGGATAATT TTACTTTATG GGTATTGCCT 000240 000241 CATTCCCAAC CACTATTACT GGATCATTTT CTGAATGCTT ATATTTTATT AAGACACAGG AATTTAAAAT TAAGTCATCT 000320 000321 GTGCTTTTGA TTAGAAGAAT GTACTTTTCA GTAGTGAAAT ACAGAGTATC TTACCAGAAA AACAGGAAGC TGAAATTTAT 000400 000401 CATTCAGAAC TACAGCTTGT ACACTACACG GTCCACAGAG CCGAGCAATA ACTTCTTTAC CCAAAAAGTT TGCATGGAAG 000480 000481 ATAAACAGCA GGATGCCAGA GCCTGAAAAT GGGAGATGTG TGTGAATTAC TTCAAAGGCA ACCTTCAGTC CCCAGAGGAA 000560 000561 CACTCAACAC CAGATGGAAG CAGGCCCCTG AGCTGGGCCT GGTCAGACAG GCATCACCCA CTCTGCCTGG AGGCTCAGAG 000640 000641 GAGGCTGGCC CTCTCAAAGC TCGTGTCACC TGGCATTTTT CAACCACAGA ACTCTTTTTA CCTTTTGCCC AAGTAATCTC 000720 000721 TGCTGACAGT TCCTGGAAAA GACTTACGTA TGATTTTCTA CACTGAAGTT ATTTAACTGG TATTTAAACA CTGCTGCTGA 000800 000801 ATGTGCACAC GTCCCAGGGA CATTCCTGTG GTGGGCATCT TTGGGTGTGG GTCTGAGTGG TTTTCCATTT TCTTCCACAT 000880 000881 ACCCTTTTGC CCCTTCCAAT TTTTCTGATT AATACATAAC CAAAAATTGG CCAGGCATGG TGGCTCATGT CTGTAATCCC 000960 000961 AGCACTTTGG GAGGCAGAGG CAGGCAGATC ACTTGAGGCC AGGAGTTCAA GATCAGCCTG GCCAATATGG TGAAACCCCC 001040 001041 ATCTCTACTA AGAACACAAA ATTTAGCTGG GTATCATGGT GGGCACCTGT AATTCCAGCT ACTCGGGAGG TTGAGGCAGG 001120 001121 AGAATTGCTT GAACCCAGGA GGCGGAGGTT GCAGTGAGCC GAGATCGCAC CACTGCACTC CAGCCTGGGG AACAGTGTGA 001200 001201 GACTCCTGAA AAAAAAAAAA AAAAAGTTGG TGGATGCAGA CATTGTACAC ATGCTGAGAA AACTGCAGGC CCAGCAGTTG 001280 001281 TAGGTGTCAG TGGGGGCTCA GGTTCACCAG GGCCAGCTCA GGGCATCGTT CTCTGGTACT CATACCTGGC AATGCAGATG 001360 001361 GTCCACCCGA ATAATCAAAA CTATAAATTA CTGAACGCGC ACGGTGGCTC ACGCCTGTAA TCCCAGCACT TTGGGAGGCT 001440 001441 GAGGCAGGCG GATCACTTGA AGCCAGAAGG CAGAGGTTGC AGTGAGCCAA GATCATGCCA TGCACTGCAG CCTGGGTGAC 001520 001521 ACAGGGAGAC TCCATCTCAA AACAACAGCA ACCACCTGAT AAGTTCTCTC AACACTAAGA TATTACAAAC GGCTCTTTCA 001600 001601 GGGGCAGGGC TATATGTTCT TAAATACATT TTCCAGGAAT GAATACAAAC CATTTACAAA ATGGGGAACA GGAGTTTCTA 001680 001681 AGCAAAAAAA GCCAGAGCCC GGCTTCCTCC CCTCGGCAGA CTGCACTGCC TCCACGTCTA CCTGGCGCCA CGTGTAGAGA 001760 001761 GGGCCAGCCG CAGCCCTGCC TGGAGAGGGT CTGTCGAGCA GAGGCTAGAG AGGAAAGTGG CTTCTCCATC TCTTTCCACT 001840 001841 CAGCTTTACT ATGGAGCAAG ACTATTTTTT TCTTTTTCAA AGGGCAAAGA CTATTACAAA CAACAAAATT CAGGGAAAAA 001920 001921 ACATTCTAGG CTTAGAATCT TGACGCTGAA TTTTAATAAA ACTCATTGAG AACTAGTGTG ATTATTAAGA CCTAACTTCC 002000 002001 ATGCTCTATA TGGGTGTTAA AACAGGGATG GGGTGTCAGC TGGATGTCTC TTCCACCAGA GTGGCTCTAC TGTTAACCGG 002080 002081 TCTGCAGAAT TATTTCACGT AATGGAATTT CCTTAAAGTT TTGTTCCAAG AAAGGATTCT GTCTAAAAAT CTGTTAATAT 002160 002161 AGTGTCACAC TTCACATAGA AAAGTGTGAA GGGAGGCATC GGCTTACCTT CTGGTATGTT CTGTGGGGGT TTGTAATTGA 002240 002241 AATCTGTTGA AAAATCTGGA CCCTCACAGA GTCGATGACA TGCGATTGGA AAAACTGGTT CTAGCAGAGC AAGGCGAGCT 002320 002321 TCAAAGTAAT CCTTTATTGT CTCTTCTGCT ACTCTTGAAA GTCTAAGAAA AAAATAGTAC GTGTTAACGT TAATGTAGAA 002400 002401 AAGAACCACA AGCCTGTCGA ATACCAGTGA GGGCTTCCCA GGCCAACCTT CCAAACAAAG ACCTGCAGCT CTGCCTGCCT 002480 002481 CCGCTTTCCA GCTCTACTTC CACCAAGCAC CTGACACCCA TGTGTCTGTC TTGTTGTCCA TCTCAGTGGA ATTGAAGTTC 002560 002561 TAAGAAGGCA AGTCTCTTCC CTCCACTGCC ATTTCCATCT CCCCAGCCTT TAGAACAGTG CCTGGCACAA AGTCTATGCT 002640 002641 TAATACATAG TTGTCTAATG AATCAGTGGA AAATCAGAAA GGGGAACCCC TCAGTACTGG GCAAATCAGG AAAGTGGGTC 002720 002721 ACTCTACTTG CTGGATCTAT GCAAACCCCC CGTGTGACCA GAGGAGTTGG GACTGCAGCC ATCAGCAGCA CTGAGTTCAA 002800 002801 CAGGCGCGGT CCCAGAGGCC CACCCGAGAC CTGCTACATA AACACCGCCT TGAGTTCGCT ACTGTCTGAT ACATGCAAGT 002880 002881 TTCTGATATG TGTTGCCAAG AGTTCTTAAG TGATAGAAAT ACCAAATTGT GTTATAAGTA TGAACCTGCA ATAAAATAAA 002960 002961 ATATGATTGA GAATTTATTT GAAAAAGAAT GAACTTGAAT AAACTAGTAA ATCTTGACAA CCAACAACAG AATATTAGTC 003040 003041 AGTGCTAAAC AGAAATGCAC TATCAAGACA TGGAAGGAAT CTTGAATGCC TATTGCTAAA TGAAAGAGGC CAACCTGCAA 003120 003121 AGACCAAATA ATGTGTGATT CCACCTGTTC TGGAAAGGGC AAAATATGAA GGAATTAAAT TACTGGTGGT TGTCAGGGGC 003200 003201 TGGGGGAGGG AGGGATGAAA AGGTGGAAGA CACAGGCTTT TTAAGGCAGT GAAACTATTC TGTATGACAC TGTGATGAGG 003280 003281 GATGGATGTC ATTATGTATT TGTCCAAATT CATAGAATGG GTAACACTAC GAGTGAGCCC TAATGTCAAT GCTGCGCTCC 003360 003361 AGGGGATTAT GCCATGTCCC TGTAGGTTCC CCAGCTGTAT GTCCCACTGT GGGTGACTGG GATCTCGACA GTCGGGGAGG 003440 003441 ATGGCGGTGG GGAGGCTTGG AAATCTGTAC CCTCCGCTCA ACTTTGCTGT GCTTAAAAGT GTTGCAAAAA ATAAAGTCTA 003520 003521 TTAAAAAG |
Predicted Small Protein
Name | NONHSAT032281_smProtein_227:505 |
Length | 93 |
Molecular weight | 10891.5171 |
Aromaticity | 0.152173913043 |
Instability index | 41.0989130435 |
Isoelectric point | 9.84881591797 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0463036565977 |
Amino acid sequence | MGIASFPTTITGSFSECLYFIKTQEFKIKSSVLLIRRMYFSVVKYRVSYQKNRKLKFIIQ NYSLYTTRSTEPSNNFFTQKVCMEDKQQDARA |
Secondary structure | LLLLLLLLEELLLLHHHEEEEEEEEEEEEEEEEEELLEEEEEEEEEEEEEELLEEEEEEE EEEEEEEELLLLLLLEEEEEEEEEELLLLLLL |
PRMN | - |
PiMo | - |