NONHSAT040034
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040034 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1421 nt |
Genomic location |
chr14-:102023639..102026131 |
Exon number |
3 |
Exons |
102023639..102023831,102024091..102024156,102024970..102026131 |
Genome context |
|
Sequence |
000001 AGCTGGCTGG GCTCGGTAGA GCGCGGGCGA ATCGCTTTCG GCAGCGAAGG AACGTGTCGG GAGAAGCCAA CTGCAGGACC 000080
000081 AGGGCCCCAG CGGGCGCGCA GAGACGCCTG CCTTGGGCGG AGGTCCCCCC CTCCGGTTTT CGTGGCTCTG GTAGGGCCCT 000160 000161 CTGTCCCGTG AGCTCCTCAC TGGACCTGAG GCTACAGGCT TCAGCAGGTC AAGCGCCCGA GTGTGCCTGG AGGATTGGCG 000240 000241 GCGGGGTGGC ATGAGAAGGT GGCCCCTCTT CTCCATCTCC CAGTCAGGCG ATTTCTCTGC TGTCTGGGGC AGGGGCGCAC 000320 000321 ACCCCAGGAA CTTACTACGT AGAGGGAAGC CAGCCTGGTC TCTCCCCCTT GCGTCAGTGC TCCTAAGCTG CCCCTCACCA 000400 000401 CTCTGGGTAG GGGTCTTTCA GGTGGGCTAG GGAATTCTCC TTGGAAGTCC CCTTGTTTGC TCCCCTCCAT CAGGGCACCT 000480 000481 CTGAGTTAGC CAATCATCCT CTTTTCTGGC CTCTTTTTTG CGGGGAGGAG AGTAGAGAGA GAAGCCTCCT ACTCGGCAGG 000560 000561 TCTCTGAGAG GAGGTTTGGG GGGGCTTCTG AGGTTGCTCC TCCTGGGCAG AGTCAAGGGG TGTTGAGGGT TCCAACTTTT 000640 000641 ACTGGACAAT CTCTCAAGCT CTGATTCCCT GATTTCTGGG AGGTGTCAGT GTAGGGCTTG TGTCCTGCCC CACCCACACA 000720 000721 GCATTTGGTG CAGGCACATG GGATGGTTCC CCAAGCCCTT TTCCCACAGT TAGTTTCAGA AAATGCATAA GCCACCTAAG 000800 000801 GCTGGGAGAG CCTTTCTGTG CTGGCTGAGA TCTGGTGGCA tgtgcatgca tatgtgtgca agtgtgtgtg tgtgtgtgca 000880 000881 agtgtgtgtg cgcatgtgca tgtgtgtgGA AAGTATGGTC TGGGTGGCTG TAAGACTGGC CCCTCTTGTC CCCTCTGCAG 000960 000961 GCCCAGCCCA ATAGGAAGCA CCTGATCCAC ACTCTTTCTA GCCCCAGGGA TGCTCAGGAA AGCAGCCTTT CTTTAGGGCT 001040 001041 GTCATCTGTT CTGGGGATCT GTTGCTGTTT CTTGGGCCCA CAGAATACAC TCCACACCTC GGGACTCCAT AATATTGGAC 001120 001121 AAGGCTGGAA GGCCCATTTG GCTCCTGCAG CCTCTTATGC AGGAGGACCT CCTGAGGCTT CGGGCAGGAG CTGGTGCACA 001200 001201 CCTGGAGGAG AGTGCTGGTG AATGGCAGTC ATCCTCTTCA GCGGTCCTCC CAGAGCTGTC CTCAGCATGG CAGCCTCCAC 001280 001281 AGCCCCTGGG TGTCACCCCC GGTTTCGTGT CTGCCTCGGA CTCCAGACCT GCCCCTCCCA GGCTGGCCCA GATGGATCCT 001360 001361 CTACAGTGAC TAACCCAAAC CAGCACCAGG CAGGGACCCA ATAAACCTTT GTGAATGGAG T |
Predicted Small Protein
Name | NONHSAT040034_smProtein_782:973 |
Length | 64 |
Molecular weight | 6825.4386 |
Aromaticity | 0.047619047619 |
Instability index | 69.6555555556 |
Isoelectric point | 8.96527099609 |
Runs | 8 |
Runs residual | 0.0179786200194 |
Runs probability | 0.0609874580464 |
Amino acid sequence | MHKPPKAGRAFLCWLRSGGMCMHMCASVCVCVQVCVRMCMCVESMVWVAVRLAPLVPSAG PAQ |
Secondary structure | LLLLLHHHHHHHHHHHLLLEELEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHLLLLLLLL LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooooooo ooo |