NONHSAT042331
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5268 nt |
Genomic location |
chr15-:48477048..48483533 |
Exon number |
3 |
Exons |
48477048..48481237,48481681..48482354,48483130..48483533 |
Genome context |
|
Sequence |
000001 GTTTAATTGA TTTACTGCTG AAATCCTTGT TTTGCTCTCT TTGCTGCATT CCTGGCTGTG CTGCGGGCAT TTTGCTGTGC 000080
000081 TTTGGTGACA GCCGTTTTCA GTAGAACAGT AGGCACTAAA TTCTTACACG TTTCTTCTTA TCCGGTAAGG AAAATTCAGG 000160 000161 AGTGAAAGGT GTATTGATTT AACTGGAGAC TGAATGTGTC GTTTGGAGTT CTTTTCCTCT ACTCTTTCCC TTCTCTCTTC 000240 000241 CACACAAACA CAACTGAATC CCCTTCCGTT TCTAGGAGAA GGCGCCTAGG CGCTGTCCGT AGTGCTGAAA TGGTGCGTGG 000320 000321 TGAGACCTGT CTCCCCAACA CAAGCTAGAA GACAACAAAA TAGCAGCCAG GAAACGCTCT GATAAAGCTC TAGATAGCTG 000400 000401 CCAGgtgatg ccagagatta ctagttttgg gaccaattaa agtagcaagA TGCAgccagg agtggtggct tatgcctgta 000480 000481 atcccagcac tttgggaggc cgaggtagga ggatcacctg aggtgaggag tttgagacca gcctgaccaa catggcgaaa 000560 000561 ccctgtctct actaaaaata caaaaattag ctgggtgtgg tggtgggtgc ctgtaatccc agctactcag gagactgagg 000640 000641 caggagaatc acttgaactc aggaggcgga cattgcagtg agctgagatt gtgccactgc actccagcct gggtgacaga 000720 000721 gcgagacatt gtctcaaaat aaataaataa ataaaaataa aGTAGCAAGA TGCTAGAGAT ATTGAATTCT GGCAATGCAG 000800 000801 TCAGTCATAG ATTGTGGGAA AGGAGATCAT TTTATTCCAT CTATTATTCT ATGTATGTTT CCAAACTGTT ACAAAAATAA 000880 000881 TTTATTCAAA ATTAGTTCAG AGACTAATCA TGTAAACATT TTGTCTGTAC AGTATGAACA ATTTTTTATG AATTTGATTC 000960 000961 CTTTGATTTT GATTTTGACA TTGTCTGGAC CAGTGGTATA GTTGAGTCTG TATTTCCATA CTATGATCTA TAACCATTCA 001040 001041 TTCTCTTTGC AGGCCGAGCT CAAGGGAGCA GAACTAAGat taggttccac tttctttgct agatgctgag atacaaagat 001120 001121 aaatgagatt tggtctctgc cctcgaggag ATACGTGGCA AAATAATATG GTAAGTTCTA CAAAGTTCTA TACAAACACA 001200 001201 GATTAATATG CTATTCATGT TTTATTAGCC ATTGCCAAAG AAGGGATGAA GAACTGCAAA AAGATAAaac acagaatact 001280 001281 tgtacttcag gtccttgcca atatctactg cccaactttt acaaaaaaaa ttgctgaaag gcatgaaata tatgaatgcc 001360 001361 tttctaaagc acatgtggat aatctatact tctggagcat ctatgattta ttttcagaac aatccaagtt attagaaagg 001440 001441 taaatatgtt ggtgacattg tttagaagtt cctcaagcag aattgccttt actatgcttt gacattatgc tctcagctta 001520 001521 tatacagtaa ttctatgtga aacagtagcc agcttacaca acctgctcta tatctactac agagctgtta ctaaagtgtt 001600 001601 ggtcaacata taacttacta tttcttatat aaagatgccc aagaaattta gatttcatag atatatcccc aaaagcattt 001680 001681 ctttcaatac cagtttaatg aattgaactt tcatacctca cttaaatcaa cccagggtaa agtggtatgt tctgttctta 001760 001761 cacacaatga aaatcatgta actaattaaa gttagcattt attttagcta ctagggatgc cagagtcaaa ttaacagctg 001840 001841 aaaatgaata actacataag accttaagcc ttttatatct tttctttttt tttaatcacc ttaactactg caattttggt 001920 001921 ttcttaggta atgataatat tattttcttt taattatttg ttttaatgtg tgacctcatg taaatgtcct cataaaatca 002000 002001 gaagtggagt aaataaataa ataaaGTAAA TTTCTCTACT TTTTGATTAT TGGGTGAGTG TATATGGTTG TTTTATAAAT 002080 002081 TTATTCTAAA TAGGATACTA AAATACAGAA AATGTATCAT CTAATTAGCT ATGAAGATAA AAATCTAAAC TATAATGAGG 002160 002161 AAATATTAAA ATGTCAAGAT GACGAAGAAA TTTTTCAGTT TATATAATTA TAGATCAGCT TAATTTCAAA CCACTTTGTT 002240 002241 ACCCTATTGC TATTTTTATA CTCTAAATAG TGTCCCTTAT ATGACTAAGA CTTTTTGTTA TCTCAGAGAT TGGAAGTGTT 002320 002321 AATTGTCCAC CTTGTTAGAA GACATGGTAA CTATAGGAAT TTAGAAAGCA TGATAGCCCA ACTGTAATGA ATATATTCTA 002400 002401 GAATGAGGTT GTCACAAAGA AACTGAAAAC AAGAATTTCC TCTAACAACT GAGCTCAGGA TTCTTTTCAG AGGAAAATTT 002480 002481 AGCTTGCATA AATTCTTGCC ATCTTGGCTC TAGTTGACTT CTTGCTCTCA ACTTTTGCAA AGTGAGATCA CCTTTACCTC 002560 002561 TTCAACCTAT GAGGCCAACA TGTTACTTTC AATTTTTCAG GAAAATCTAC GTCTTGTTTG GCTGAGGTTT GATTATTATT 002640 002641 CCTTAACTAA AATATTTTAA TGTAGCTGTG CTTTTTAATT TGAATATTGC TATTGATTCA AACATTGGGT AGCATATCTT 002720 002721 TCAAATGTGA AATTTTAAAA CATGTATTAA AGACAAACAT AAATTAGTTT TGGTATAACT ATTTTTTAAG ATTAATCCAA 002800 002801 TGCTTTTTTG GCTTTAGATG ATGTTTGGTA ATTAGCTATA TTCAAAAGTC AACCTTTTTT TTTTTTCAAA AAATGAACTC 002880 002881 CTATGTATAT GAGTGTTATT TTTATCTACC CATGTCTTTT TTGTCTACAT ATACAGTTTT AATCATTGTT TCGGGGGGAG 002960 002961 GAATAAGAAT GATTTTGAAA TTTCACTAAG AAAGATATGC CCTCTTCCTA AAAATACATA TATACAGATG TTTTGCTCAC 003040 003041 AGCTCAGGTA TTCATGGATC TCTGGAAGTT CATTTTTATA ATCCCAAGGT AATCCAAAGA GCCTGCTAAA AAATTCTGCT 003120 003121 GTAAATGCAT GGTACATGAT CTCATTCCCT GTTTTACAAC GAAGTATTGA ATGGCTTAAA CTCCTACttt tttttttttt 003200 003201 tttttttttg agatggagtc tccctctgtt acccaggctg gagtgcagtg gctcgatctc tgctcactgc aacctctgcc 003280 003281 tcctgggttc aagcgattct cctgcctcag ccttctgagt aactgggatt acaagcacat gccatcaggc ctggctaatt 003360 003361 tttatttttt ttttgtattt ttagtacaat cagggtttca gcatgttggt caggctggtc tcgaactcct gacctcatga 003440 003441 tccgcctgcc ttggcttccc aaaatgctgg gattacaggc gtgagccaac gcgcctggcc AACTCCTACA TATTTTAAAG 003520 003521 CCACCCCATT AGTTTTCTAT TTTTTTCCCC TTGGAGATCT TCCTTTAGGT CATTTTTACC ATCTGATATC TCAAAACTAA 003600 003601 GCCAAGGCTG AATGTGCTGA AATAGGATTA GAGAGTACAG TAATAGGATA ATTAGATTTG ATTAGAAAAT GACTGTGTGG 003680 003681 GATTTTGTCA ACAGTGAAGA AATGATCTAA GTATGTGGAC TCCTAAGTGA ATTGAGCATG ATGACACTTT AGTGTAGTTA 003760 003761 ATGATCTAAT GCTGGTCTGG TTGATGAGTC CCATTGAAAA TGAGATGCTC TGTTTTCTGG TAAACTTTTC TGCAAAGAAA 003840 003841 AATGTACTAA ATGTTTCAGT TCAGAGTGTT CTATTTAAAT GAAATTTCAT TTAATTGCTT TTAGTTTTAC TGCCCATAAG 003920 003921 CCTTCAGTTG TTTCATTTAA AGTGTACTTT AAGCCCTCCA CTATATTCAC TGTTGAATCT AATGAGTATG AGAGGGTACC 004000 004001 TTGGGCACAA TCTCCACGAA TGTATGAGCC ATAACTACAG TATAGTATAT AGAGATTAGC TTAAGTTATT TTGCTCTGCT 004080 004081 AAAGATAGAG AAACAAGAGC AGTTttctaa cataatgtat gcttctgtaa taggactcag ttaaaaaata attggcaaat 004160 004161 aggaatgtca atgaaatgtg gaaatcaatt gttttataca tgattttccc caatacgtta atgttttgaC TACCAAGTAA 004240 004241 AAGCAGTTGC ACTCTAAGTC CACTAACACA GCTGAAGGTA GTAAGCTGTG GAGGAAAGTA GTCCTATATA TAACACCCAT 004320 004321 TCACTCCTCC TTTTTCCTCT TGGCTTAATT TCACCATACG ATCTGTCTTG AAAATGCTTA TTGCACAATT CTTCCTGATC 004400 004401 TTTGTGCATT TGTCCTTGTT TTTGTAACTC AACCTTTGGT TTATTTATTC CATCATTCTT TCCTAACTCA AACAAATTTG 004480 004481 TGAAGTTCTA AATGTATTGA AATATATGTC GTAACTTTTA TTTTTAATTG TGCTAGCATT TTCTTAGCTT TGTAAATGTT 004560 004561 TTTTGCAGTG CTATGGTTGT GATGTTATGT AAGTTTTACA CTTTTTTCTC CAACATAATT TTTTCCCGAA ATATTGCCAG 004640 004641 TTATTTTTGT TATTGaatag acttaatttt cttagagcag tttcaggatt acagaaaagt cagagagtac agaaagttcc 004720 004721 catatatctc ccatcccttt tctcacagtt tcacttgtta ttaacatctt acattagtgt ggtacatttg ttaacaattg 004800 004801 ataaaacaat tttgttacat tattattaag tacacagttt acactagagt ttattctttt tgttggtcag ttctatgagt 004880 004881 tttgaatagt gtataatgtc atatattcac cattatattg tcatgcagaa tagtttcaca tttctgaata tcccctattt 004960 004961 atcccttcct cttcccctca caaacccctg gaatccattg atctgaaact gtcttgcagt tttctctttt ccagaatgta 005040 005041 tgtatagagt catacagact ctgttgccct ttcaaactgg cttctttcat ttaacaacac gcatgtaagc atccttcatg 005120 005121 acttttcatg gcttgatagc tcatttattt tttattgttc aataatattt cattgtatgg atatgccaca gtttatttat 005200 005201 ctatatatct gttgaaagat atctcggtta cttccaattt ttggcaatta tgaataaaga tactataa |
Predicted Small Protein
Name | NONHSAT042331_smProtein_3212:3439 |
Length | 76 |
Molecular weight | 8415.609 |
Aromaticity | 0.16 |
Instability index | 55.7908 |
Isoelectric point | 5.97662353516 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.0942141236258 |
Amino acid sequence | MESPSVTQAGVQWLDLCSLQPLPPGFKRFSCLSLLSNWDYKHMPSGLANFYFFFVFLVQS GFQHVGQAGLELLTS |
Secondary structure | LLLLLLLHHHHEEELHHHLLLLLLLLLEEEEEEEELLLLLLLLLHHHHHHHEEEEEEELL LHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT TTooooooooooooo |