NONHSAT047334
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047334 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4820 nt |
Genomic location |
chr15-:75650076..75655518 |
Exon number |
4 |
Exons |
75650076..75653532,75653627..75654061,75654196..75654288,75654684..75655518 |
Genome context |
|
Sequence |
000001 AGGAACTGCA GCCTGGGAGT CAGGAGAGGC TGTAGCACCT CTGGTAGGAC AGCTGGCTCC ATCCTGGGAG CCATGCCTCT 000080
000081 GTTCCCAGGT ATACATCAAG TTTGTGCAGG GGCAGGGTAG TCCCTGCTAC TTCTCGTAGG ATCCTCTAGG GGATGTCTAA 000160 000161 TTCCCCAAGA GGACTGAGGC TATTCTGGGG CCTGGAGCCT CCATTTCCTG ACCTGTATAA TTGGCCTCAT AGCACTGCCG 000240 000241 CCTCCTTTCC CCAGCCCCTC CTCCCACCTC GCTGGAGTGA AGTGAAGTGA CCACTTAGGA GGGACACCAC AGGGCTTTCC 000320 000321 AGGGTGAAGG GCCTGGGATG GGAGGGGGGC TAGGTGACCC TCTGGAGTCC CAGCCCAGGC CTGGTCAGCC TTGCTGCTCC 000400 000401 CTCTGTCCTC CACCTCACTC CCCGTATAGC CTGGCTTTGG CCCTTCAAAG AGACTGTGAG GAAATGTGCC CGGAGCTGGG 000480 000481 TGACCGCCCT GCAGCTCATG GAGCGGAACC CTGAGTTCAT CTTTGCCTGC TCCCAGGTCA GAGGGACAGC TGTGAGGGAG 000560 000561 GAGGGAAGCA CGTGGCCCTC CCTGGAGCTC CACAGGCCCT GAAGGCTTCC CAGGCCTGGG GTCAGGGCTG CTCCTCACCC 000640 000641 TCAGCCACAC ACTGAGTCCC ATATGCTCAG TCCTGGGTGG GGCCCTTGTC ACTCTGGTCC CAGCTCCCTT CAACCTGCCC 000720 000721 ACAGGCGCAG CAGCTGGAAT GGGTGAAGAG CCGCTACCCT GGCCTGTACT CCCGCATCCA GGAGTTTGCG TGCCGTGGGC 000800 000801 AGTTTGTGCC TGTGGGGGGC ACCTGGGTGG AGATGGATGG GAACCTGCCC AGTGGAGAGG CCATGGTGAG GCAGTTTTTG 000880 000881 CAGGGCCAGA ACTTCTTTCT GCAGGAGTTT GGGAAGATGT GCTCTGAGTT CTGGCTGCCG GACACCTTTG GCTACTCAGC 000960 000961 ACAGCTCCCC CAGATCATGC ACGGCTGTGG CATCAGGCGC TTTCTCACCC AGAAATTGAG CTGGAATTTG GTGAACTCCT 001040 001041 TCCCAGTAAG CAGGCCCCCG GGGGGTCAGG GTCAGAGTGG GCCTCAGTCC CGCCTGGCCC ATTTGCCTCT CCCCCTTATT 001120 001121 GTGGGGTCCT AGACAGACCA CCAAACCCTC ACTCTGCCTC TGCCAGGGTC ACATAGCAGG CAGGGGCAGG ACCAAGTCTG 001200 001201 GAAGGCCTGG CTCTGCCTCA GCCCTGACTC TGGCCTCTCT GCCCTGCTTC TGTTTCCCTG CTGGTAGCAC CATACATTTT 001280 001281 TCTGGGAGGG CCTGGATGGC TCCCGTGTAC TGGTCCACTT CCCACCTGGC GACTCCTATG GGATGCAGGG CAGCGTGGAG 001360 001361 GAGGTGCTGA AGACCGTGGC CAACAACCGG GACAAGGGGC GGGCCAACCA CAGTGCCTTC CTCTTTGGCT TTGGGGATGG 001440 001441 GGGTGGTGGC CCCACCCAGA CCATGCTGGA CCGCCTGAAG CGCCTGAGCA ATACGGATGG GCTGCCCAGG TCAGGCCAGG 001520 001521 CCTTGGCTCT CCTTTAGCCC CACCCTGGGC CCTTGCCATG AGCCCTGCCT TCCCTCAGAC ATTGGGCCCA ACCCCTCCTC 001600 001601 TGGACCTTGT CCTGTCCCAA TCCTAGACCA CGGGTTCCTC CAAACTTCCA CCCTGGGGGT GGGTGGGGGA GAAGCTGAAG 001680 001681 CTGGTAAGGG CTCCAGCCCA TCAGAGAGAG AGGCTCTCCT AGGGCGTCCA GGGCTGGCCA TCTGTGAACG GGGAGCTTTC 001760 001761 TGGAGTGGCT CCTCTCTGTA GGAGCTGGAT CCTTTGCTTT GGTGTGGAAG AAGGGTGAGC CATGTGGTCT CCAAGGCTGG 001840 001841 GAGACCTAGG CTTGTGGTCT CCTCAGGGTG CAGCTATCTT CTCCAAGACA GCTCTTCTCA GCACTGGAGA GTGACTCAGA 001920 001921 GCAGCTGTGC ACGTGGGTTG GGGAGCTCTT CTTGGAGCTG CACAATGGCA CATACACCAC CCATGCCCAG GTCAGGGGGA 002000 002001 GGTTGCAGGG CTGTGCAGGG AGGGTGTGCC CTTGATCTGC AGAGGGTCAG AGAAGGCAGC AGGGGACAGA GCCCAGGCCA 002080 002081 GATCTAGGGG AAGAGAAGTT TGGAGGAGAG AAGTTCAAGA CCTGGGTTGG TCAAGAAAGC TTGAAGGAGG CAGAAACCCC 002160 002161 TGAAGAAAGA AGGGTTTGGG CTGCGGGGAG AAGAGGGAAG GCATTTAAGG CAGGTCACCC GCCAGAGGCC TTCTCCACGA 002240 002241 GGCCCTTGGT GAGTCCTCAG GGATTCTGAG CAAGGGAGGG CTTTGGAAGG TGTCCTGGGA CAGCTAAGCA GGCTCCAGAC 002320 002321 TAATCTTCCC ATCCTGGGCT CAGATCAAGA AGGGGAACCG GGAATGTGAG CGGATCCTGC ACGACGTGGA GCTGCTCAGT 002400 002401 AGCCTGGCCC TGGCCCGCAG TGCCCAGTTC CTATACCCAG CAGCCCAGCT GCAGCACCTC TGGAGGTCAG CCCAGTTCTG 002480 002481 TCCCTGCCAT CCACCTGACT GCTCACTGCA GTTACCTCTG TGCCTGCCCC TCCCAGCCTT CCCATCCCTG CCCTTGGCCC 002560 002561 CTGCAGGCTC CTTCTTCTGA ACCAGTTCCA TGATGTGGTG ACTGGAAGCT GCATCCAGAT GGTGGCAGAG GAAGCCATGT 002640 002641 GCCATTATGA AGGTTAGGCT CACAATAGTC CTGCCTGCTC TCTCCAACCC CAGGGCTGAG CCCAGAGTGT CCCCTGTGGG 002720 002721 ATACCCATGG GCACATTCCA GACCTGTTGC CCACCTATGA CCAGCCAGTC TTTCCTCAGA CATCCGTTCC CATGGCAATA 002800 002801 CACTGCTCAG CGCTGCAGCC GCAGCCCTGT GTGCTGGGGA GCCAGGTCCT GAGGGCCTCC TCATCGTCAA CACACTGCCC 002880 002881 TGGAAGCGGA TCGAAGTGAT GGCCCTGCCC AAACCGGGCG GGGCCCACAG CCTAGGTACG AGCTGAGGGG AAGGGTTGCT 002960 002961 ACTGCAGCAG GAAGGATGGA GGCCAGACAG ATCAGGCCTG GGATACCCCG AGGGATCTGG GTGCCCCTGA CTGGAGAGTA 003040 003041 GTAGCACATC TTCCACCAAC CCATCCCCAC CTGCGCAAGC TTCCTGAAAG GTCAGGAAGG CTGCACTGAT GCCCAGGCCT 003120 003121 CACCCCCAGC CCTGGTGACA GTGCCCAGCA TGGGCTATGC TCCTGTTCCT CCCCCCACCT CACTGCAGCC CCTGCTGCCC 003200 003201 CAGCAGCCTG TGTTCGTAGT GCAAGAGGTG AGTCCTGCAT GCCCTGGGGG GCAGGAACTG TGCTGGGATA CTTTCTTACA 003280 003281 ACTGAGGGTC CTGAGCTCCC CTGTCTGGAG CAAGTGGTGA GGCGGGGCTG GGGTTGGGGT GGGAAGACTT TTGGTGTGGG 003360 003361 AAGCCCCTAC AGACTCAGCC TCAAGGCCTC CTCCCACAAA GACTGATGGC TCCGTGACTC TGGACAATGG CATCATCCGA 003440 003441 GTGAAGCTGG ACCCAACTGG TCGCCTGACG TCCTTGGTCC TGGTGGCCTC TGGCAGGTGC CAAATCCTCA TTGCCCTTTC 003520 003521 CCAGTGCCTG GCAAGTAGAC CCCAGGCCAT TTCCTCTCTC CCCTTGCCAC AACACTGCCC ACAGCAGCCC ACCAGTGGCT 003600 003601 CTGGGCTGGA ACCCACACAT GGAGCAGGGC AGGCTGGGCA GTAGTCCCCT GTCCACTGGG TCTACTCACT CCACCCTACC 003680 003681 CCACCAAGAG CAGCTGGAGA CAGCGAGGTC AGTTGGTTGT ACAGCACCAA TCCCATGTCC TTCCAGGGAG GCCATTGCTG 003760 003761 AGGGCGCCGT GGGGAACCAG TTTGTGCTAT TTGATGATGT CCCCTTGTAC TGGGATGCAT GGGACGTCAT GGACTACCAC 003840 003841 CTGGAGACAC GGTATAGGCT GGGCAGCATG TGGGGATGGT GGAGGTGGTG GGAACACAGG CTGCTCTGGA TCAGTATGTC 003920 003921 CACCCCTGTC CCATAGGAAG CCTGTGCTGG GCCAGGCAGG GACCCTGGCA GTGGGCACCG AGGGCGGCCT GCGGGGCAGC 004000 004001 GCCTGGTTCT TGCTACAGAT CAGCCCCAAC AGTCGGCTTA GCCAGGAGGT TGTGCTGGAC GTTGGCTGCC CCTATGTCCG 004080 004081 CTTCCACACC GAGGTAGTCG GGGGGTAGGG GGTGGCTGTT TTCCCCAAGT GTGCTTGGTA AGGAGGGGCC AGCCCCAGGC 004160 004161 CTTGGTGTGT CTCTTCCTTC CCTGACTCCC ACCCTCCTTC CCACTCCCAG GTACACTGGC ATGAGGCCCA CAAGTTCCTG 004240 004241 AAGGTGGAGT TCCCTGCTCG CGTGCGGAGT TCCCAGGCCA CCTATGAGAT CCAGTTTGGG CACCTGCAGC GACCTACCCA 004320 004321 CTACAATACC TCTTGGGACT GGGCTCGATT TGAGGTCTGA CATGGCAGGG TGGGAGTGGC CTTGGACTCC TCCCTGGCTG 004400 004401 GGGAGACTGC TTGTGTGGAA CAGGCTGGGG AGGAAGAGGa taatcaacat ttgctgcttc ctaacgtgtg tgccaggcat 004480 004481 tgcactaaat gctttacatt ggcaaggcac agtggctcac gcctgtaatt ccagcacttt gggaggccga ggtgggtgga 004560 004561 tcacctgagg tcaggagttc aagaccagcc tggccaacat ggtgaaacgc catctctact aaaaatacaa aaattgggcc 004640 004641 gggcgtggtg actcacgcct gtaatcccag cagtttggga ggctgaggtg ggtggatcac gaggtcaaga gatcgagacc 004720 004721 atcctggcta acacgatgaa accctgtctc tactaaaaat acaaaaattt agccgggtgt ggtggtgggc gcctgtagtc 004800 004801 ccagctactt gggaggctga |
Predicted Small Protein
Name | NONHSAT047334_smProtein_4283:4567 |
Length | 95 |
Molecular weight | 10303.9141 |
Aromaticity | 0.0851063829787 |
Instability index | 41.1925531915 |
Isoelectric point | 9.13299560547 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0429105576164 |
Amino acid sequence | MRSSLGTCSDLPTTIPLGTGLDLRSDMAGWEWPWTPPWLGRLLVWNRLGRKRIINICCFL TCVPGIALNALHWQGTVAHACNSSTLGGRGGWIT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHEEEEEELLLLLEEEEEEEEE LLLHHHHHHHHHHLLEEEEEELLLLLLLLLLEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTT TTTTTTTTTTTooooooooooooooooooooooo |