NONHSAT047442
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047442 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3558 nt |
Genomic location |
chr15+:77774392..77777949 |
Exon number |
1 |
Exons |
77774392..77777949 |
Genome context |
|
Sequence |
000001 ggagaaacat cttgcttgaa aatatctgcg tagatgagta cagaatccaa gactagaacc acagatatct aaactctcTC 000080
000081 ATTCACTGGG TTTCTAAAAC ATTGCTCTAA GGAAGAGGTG GATGGGGGAA GGGGAAAGCA CTAAAAAATC CTGAAATAGA 000160 000161 GCATTAAGAT ACATAGGAAG TAAACAGATA AAAATTGTAA TCCAGGAATT ATAATGTTAT AGAATTTTAG CTCATTTTAA 000240 000241 AATTATTTTG ATAAATATAC AGTGGAAGAA TTACCCTACC TGTCTGTCAC CTTTCTTGTA GCTGAGTAGT ACCTAGAGAC 000320 000321 AAGTGGAGCT AGGAGGAGGC CATGAGGGTG ATTTTAAGTT GAAAGGTGAC TACCTTATAT AAACTATTAA AATGCATATG 000400 000401 TTGCCTGATT TCAATGATAA TATTTGGCTG TTTGAGTTTA GGGAAAAAAA ATCTTATGTG ACTGTATTTT TATTAATATG 000480 000481 AGAAATGTTC TTGATTATAT GCACATAATA CATCTCTATA CATGCAGATA TCCTTAGTTA ACACTTGAAG AAAATTGGTT 000560 000561 TTGATTGACC ATACATTCTT CAGACTAAAG TAGGGTACTC ATTTTCCCTC CTCAGGTTTG TCCCTGATAG TTGCTTTTCT 000640 000641 GTGTTTAGCT GATGATTTTC CTACCTCCCA TTGTTGCTGA ACTGGAACAG GGCCATGTTT CTCATTGAAA TGTTATGTAA 000720 000721 AACATCTCAA TGAGGTTGCC TGCTTACAGC TTTATGAGTT CTTCAGTTTA CATACACCCT GCACTCACTT TAACGCTTAT 000800 000801 GAAACCAAAG CATTTTTAAA ATCCATAGCG CTAACCCCTT CCATTCAATA CTTACTTTCT TGGTGTTATT TTCCTTGttt 000880 000881 gtttttgttt ttgttttgtt ttgttttCCT GATTCTACAG GTCTTAGAAC TCCAAGATGT TCCATAAGTG TTTTTACTTG 000960 000961 TGAGGAATGA GAAGCCATCC ATGGAAATTT GAACTGAGTG GGGGCAGAGA AAGAGTGCAG ATCCCTTTGC TTGTGAAAGA 001040 001041 ATTATCAGTG AGTGAAAGGC CATCACCCCA GGAAGCCAAA TGAGGGAGCA GCAACATGTA TATGAGCTTC CTATGGAATT 001120 001121 GTCCTTATGT GAAGCTTTGA AGGTGTACAG CCACTCTCCC GGGTCTTCAG GTTCCTACCA TTTCCATTTC TGTTAAAGTG 001200 001201 GATCTGCATA TCTTCAGCTT ACTAGGTGAC CCGGATGCTG ACATCTGCTG CTGCAGAAAG GAAGACTTTT CATTGTAATT 001280 001281 TCGCTTAGAC CCTTTTATCA GTGGAGCTCC AGTTTTCTTA CCTAGCTGTC ACTTTTTTAA ATGCCTCTGG GGGTTATTTT 001360 001361 TGCTTTCCTT GGCCCCCACC AATTTATACA TCTCCATTTT CTGACCTCTG GACTAACTGG TTGCTCAGCA AGGTTCTGAA 001440 001441 GGAGAGTTTC TTGCATTGGA CAGGCCCAGT CTTCTCCCAT CATTGCCCTG CTGTGACTCC AAAGAAAGGA GCTTCTTGCT 001520 001521 GACAGTGCCC TGTGGAGCAA GGCTGTGTTT CCTACCCCAC ACGGTGCTCA GTGGGTGCCA GCCCTCAGTG TGGCTTTGTG 001600 001601 ATTGCTGCCC TAAAGGAGAA TGCTCTTTCC TTCCTCACTG GTACTGCCTG CTGTTTTCTA AGCATTGCTC CTGCACAGAC 001680 001681 ATGGAGTCCC AGCCCCAGCA AGGCTCTTCT GTTCCCATCT GTTGACAATG TCTTGTGGAG CATTTTTGCT GAGGAAAAGG 001760 001761 TCACTTGTAA ACAGAGGAGA AAGGGAAAGA GTACAAAGCC CTAAGTTTAT TGTAAGTGAA AACTGAGGGA ATTCCTGTCT 001840 001841 TCTTTAGGAG TAATGATTCA TAGATCTAGA TAGGTGGAAA TATCATTCAA AATAGTCACT TGAGCTCACA AAAAAAGCAA 001920 001921 GGAAGAATTC TCATGTCCTT TGTCTTCCTT CTGTAGCCAT TAACTGCTGA ATCCATGTGA GGAAGACAGG CTTCCCTTCC 002000 002001 TTCCCCCTCC TTAGTGATTT TTTCTTTAAC AGCATAAGTA AAGAGGACTT TCTGGTTCAT ttttgtttgt tttgttttgt 002080 002081 tttgttttgt ttACagatga ggtcttcctg tgttgcccag gctggagtgc ggtggctatt cacagatgct atcatagcac 002160 002161 actacagcct acaactcttg ggctcaagca tcacgcctag cagtttcTGG TTCCTTTAAC AGCAAAAGGA AAGAGAGGTT 002240 002241 CTGATTCTTA CCTCAGGGTT TTTTGGTTGT TCAttgtttt tgtttttgtt tttgttttGA CACTGCAGAG CACAAGGCTA 002320 002321 AAGGTTACAG CTGAGATCTT TGGAACCAAA GGCAGAGCAA GCAGAGCCCG TTGTCTGGGC CCCACACCAC TGCAGGCAGG 002400 002401 TGGATAGAAG TGCGGCCCCT CTCATAGTAT GCCCATAAGT CAGGGCATAG GGCAGAACTA CCTGTCATGT TGCTACACCA 002480 002481 TCCTGTCTTC TCAGCATCTC CTTGCCTGTT TTCTTTATTA GTCCAAAGGA AAACAACAGC AACAAAATCT GTTTTTAAAA 002560 002561 TGTCTTATAT GAACATATAT CAAATATCCA TGCGCTGAAA CCCACATACC ATCACTTGGC AATTTTTTAG AATAAGACCC 002640 002641 CATTATTATC TATTGCTATA AACCTAGCCA GTTCTCTTGC TCTTCTGTAT TTTCCTATTT CCCTGCCATC ATCTGCTATT 002720 002721 TCTGCCACTT CTCTTAGACT CCTTGTCTGC AAAGCCCAAG CTAGAACTCA CTGTCTATGG CAGAAGGACA TCCAGAGCCC 002800 002801 ATTCTGGAGT TTTGTTTTTT CCTTCTGCCA GATGCTTTGT GTCCTGTCTT CCTTCCTCCT CATATTTCTG TTTCTCATTT 002880 002881 GTGTTCAGTT TTGTGCAGCA TTGCTAGCAC TGCTTTTGTG ACCAGAAAAG GCCATAACAT GGTCCAGGAT CATCATTCTT 002960 002961 CTGACTCTAG ATGGGACACT TGACAGTGAC TTGAAACATT TGCATATTCA GGAATGCATG AGATTTCAAG AGAGCCTACA 003040 003041 GTATGAAATC ATTTTCACAA AATAAGCAGC TTGCTTCTGA AATGCTGTCT TTCCCAGTAG CTACTCACCT GCCTCTGGTG 003120 003121 GCTGGGATTC AGATGCCACA AAACTGTCAG TATCTATAGA CCAGGTCTGT GCCACCTCCT CTCTCCTCTG TGCTCAGTGA 003200 003201 GGAGGCAGTA AATGAAGTTA CAGGCTAGCA CAATACCTAA CTCATGTTTC CCAGTACACC TGTAGATATT ACTGTACTTT 003280 003281 TATGTTCTCA AGAAATAAGT TGTTGCCTAT TCAGTGTTAC AGATTTCTTT GTTTCTTTTT AATTAAAATA CAAGAAGCAG 003360 003361 CTGAGGAAAG GGAGACAAGG TATTTTATTT CTGACTGATT TTAGAAAAAA CTTGTGTACA TGTGTTTGGA ACTGTTGAAA 003440 003441 TGCCAAGTTT TCTGTATAAG TGTTTTTGTA ATTAAACTTT CAGATTTTCT TTGTTTTTTA AGAAGTTGAT GTGCTTGTTT 003520 003521 GACATTTGTC TCATTAAAAC TTTTCTACGT TGAATTCA |
Predicted Small Protein
Name | NONHSAT047442_smProtein_2096:2218 |
Length | 41 |
Molecular weight | 4461.1262 |
Aromaticity | 0.15 |
Instability index | 78.7925 |
Isoelectric point | 7.99884033203 |
Runs | 5 |
Runs residual | 0.0530241935484 |
Runs probability | 0.0347641759406 |
Amino acid sequence | MRSSCVAQAGVRWLFTDAIIAHYSLQLLGSSITPSSFWFL |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |