NONHSAT047938
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047938 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1286 nt |
Genomic location |
chr15+:84944332..84946235 |
Exon number |
2 |
Exons |
84944332..84944549,84945168..84946235 |
Genome context |
|
Sequence |
000001 cagatggtgt ataagagtat tttgtcaaaa ctgtaaagga ggatgtggct ataggggctg attgttCTCA TGAGTGTTAC 000080
000081 TACTCTTCTT TCCCACAGTT AAAAGAATAT TGGCAGAGGA AGAGCCCTGG CATTCCAGAA GGAGCTAACA GGAAAAAGAA 000160 000161 AATCAATGGC AGTAGCCCTG ACACAGCCAC TTCTGGTGGT TACCACTCAC CTGGGGATTC AGCAACAGGT ATCTACGGGG 000240 000241 AGGGCCGTGC ATCATCTGCT ACCCTGGAGG ATCTGGAGGT AAGAGGCCCT GGGCCGAGGT GCAGTGACCC TGCAGGCTAG 000320 000321 CCCTCCAACC TCCTCCCACA GCAGGGGCTT GTTGCCCCTC TGCCAGCTGA GGCAGCCCAC ACACCCCCAC CAGCCCTAAT 000400 000401 GATTATTCTC TCTACCCCTC CCCACAATCT TCCTCCAACT CCTCCTCTCT GCATGCACCT CAGAGCCAGT ACCAAGAACT 000480 000481 AGCAGTGGCC CTGGATTCAA GCTCCACAAT AATCAGTCAA CTCACTGAAA ACATCAATTC ACTGGTAAGA GTCCAGTGGG 000560 000561 GTCCCCTGAT TCCAGCCTGT GAATCCTGGA CTCCAGTTTC CTCTTGGGGC CCTGAAGAAA GGGGCTAGGA GCCCCTGATG 000640 000641 CCAAGGGCAA ATGGGGAGCT GGGCACCCAG GTCTCACCTG GAGGGACCCC AGAGCACAGA ACATGCAGCA TGGCTCTTCT 000720 000721 GCACTGCCCT CTTTGCTGAC TCTCTCTTCT CCAGACACCC CTGCTCTAGT CCTTGCCACA CATGCCCTGG GGTTGTCACC 000800 000801 TCTCAGGAAA GCACTAGCCT gactggtttt caggggcccg tatttctgcc ctgcctcagt ccctaatttg ctttttgagt 000880 000881 ctggacaagc catctctcct ccttaggctc gtgtttctgg aggaggtaga gagtatcaaa ggtcactgtt agctcagaga 000960 000961 ttTAAAGGCT Cctagaatgg aaacctcagg accaagggct cctgtctgtc ctttgctgtc ttatatctct gctatgaaga 001040 001041 actgtacctg gcctgtacgt gctcagtaaa tgtttgttga gtgaatgCAC CTTTCTCAAT CGTAAGCTGG CAGAAGGGGG 001120 001121 GTGGGCCTTT CTCAAACTCT GTCTCTAGAG GTTCAGCAGC CCCTCTCTGC AGGGCCCTTT CCCCTCTGCT TTAGGCAGGT 001200 001201 TCACACATTG AAAGAGGAGA AGCATGAGAT ACATCAGGTA CAGAAGCTTG GGAGGAACTT GTTCAAACTC AAAAACCAGA 001280 001281 CGGGTA |
Predicted Small Protein
Name | NONHSAT047938_smProtein_650:865 |
Length | 72 |
Molecular weight | 7592.4977 |
Aromaticity | 0.0985915492958 |
Instability index | 71.0309859155 |
Isoelectric point | 5.98345947266 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0301281673831 |
Amino acid sequence | MGSWAPRSHLEGPQSTEHAAWLFCTALFADSLFSRHPCSSPCHTCPGVVTSQESTSLTGF QGPVFLPCLSP |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLHHHLLLLLLLLLLLLLEEELLLLLLLLLL LLLEELLLLLL |
PRMN | - |
PiMo | - |