NONHSAT050827
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT050827 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2520 nt |
Genomic location |
chr15+:99571773..99574279 |
Exon number |
1 |
Exons |
99571773..99574279 |
Genome context |
|
Sequence |
000001 GTTTAGTTTA GTTTAGTTTA GTTTAGTTTA GTTTAGTTTT TTAAGACAGG GTCTCGCTCT GTCACCCAGG CTGGAGTGCA 000080
000081 ATGGCATGAT CATGGCTCAC TGCAACCTTG GCGTCCCAGG CTCAAGCGAT TCTCTCATTT TTGTCTCCCA AGTGGCTGGA 000160 000161 GCTGCAGGCA TGCACCACCA TGCCTGGCTA ATTTAAACAT TTTTTGTAGA GAAGGGGTTT ACCAGTGTGG CCCACGCTGG 000240 000241 TCTTGAACTC CTGGGCTCAG GCGATCCTCC TGCTTTGGCC TCCCAAATTG TTGGGATTAT AGGCGTGAGC CACTGCACCT 000320 000321 GGTCCCCCAG AAGCTAAAGG ATGGTGCAGG TTCTGTTTTT AAATGTACCT GTTAAGTATG TATTAGCTCA AACAGAGTTT 000400 000401 ACCTGAGATG TGCATCTGGG GTCCACCCTC TTTGGCACTG TCCCTCATTT TCCTCCTCCA ACATTCTCCC AATCTCTCTC 000480 000481 TGTTAACCCC AACAACCTGC CACCCCTCCC TAACAAAGGA TTCCCAGCTC AAGGCCAATT CCAATTGGAT CGAGTTTTTC 000560 000561 TTCTGCAGAA ATTGTGGGGA GGTGGCTTCA GAGGCTCACA AGCAGAACCC CACCCAGACA CATAAACCTT TCTTTGGCTG 000640 000641 GTACCAACTC CTCTATTGCA GGGTATGGTC CAAGTAGGTT ATACAAGTCT CTACCTCTTC TAGCTGAAGC CAACCTCCCA 000720 000721 GGAAAAGGAT GAGAGGAGAA AGCCATCCTG CCTGGTGTGT GGATAATACC ACCACCAGAG TCTCCTGTAA TTTTGATTCG 000800 000801 ATGGCATGCA GCTGCGTGAC CTAAGGCACG TATCTCCATT CACAGGGTGT GGTCAGTACT CTGTGAATAT CAGGTGTTCT 000880 000881 GTCTGCCCTG TCTCCTGACT TCCTGGAGCC TGCCCTTACC CAGTGAGTCC CTGGAGGGAA CATTCTGGTA TCTGGCTGTG 000960 000961 AGCTGTCACA GACATGGGTT TCTTTCGGTT CCCAGAATGA TGGGATGCCA GCCGCTGGCT GCCCCCAAGA AACTTGGGAG 001040 001041 CAGGACAGGC TTGGCTGTCC CAGAGGAAGA GCCTGGCATT GGGCCAGGAG GCTCAGGAGG GAAGATGAGC TCATTCTGCC 001120 001121 CAGCTCGGTT CTCCCGTATG CAGACCAGGT CATCACAGGG ACCTGCCTCC ACATTTGCAT CCCCCACGGC ATATTTTCCC 001200 001201 AGCACATGCA GCATTGGGAA CTTGAACGTC CCTCTGCTTT TCCTTGGTGA GACCCACCAG CCCCGCCTTA GGAAGGAGGC 001280 001281 TGAACATTTG ACGGAGCTTT CCTGTCACCT GTGAGCGACG TGCACGCTGC TTCCGAAGAA AGAGACATCC CCCTACTGTT 001360 001361 TTCTCACAGT GGGATGATTC AACTTTGTCT TTCTCACAAT CCCAGATAAT CATATCTTCC CAGGTTTTGT CATCTTTGAG 001440 001441 GACTACTCAC TATCTAGTTA TGAGTCAAAC AAAACCCAAT TTAACTGATA AGTAACCAGC CATCACGTAT CCCTGAAGAT 001520 001521 AAACCTGGTT TATCCTTTTT ATACCCTCTG GCAGAGCAAA GGAACAAGGA GTTTGGGAGA GAAAAAAAAA CACAACACTA 001600 001601 GAAACAGCAC TGACACAGGT CGTTAAATAC AGATGTGACC AGCCTTGATT ACAAGTGTTG TCATCCTCTT TTAACAGGGA 001680 001681 CCTACCCCGA ACTTTCATGA ACCCCTGGTA GCTGAATAGC AGCTTGTCTA AGCGAGGTGC AGGCATTTTG TCAAAGTCGG 001760 001761 CCTCGGTGTT AAAGGCAGGG CCACCTACCA TGAACTTCTC TCTGTGACTT TATTCTTTAG CAGTGCTCAA GTGTAAATAA 001840 001841 ACTTGTTTAC CAGGATCAGA ATGGCCATGT TAATGAAGTC TTATTTGTGT CACCACAATG ACAAGTAATT TGTGCACAGC 001920 001921 TGGACTCGGA GAGGGGACAA AACCAGAGAA ATTGTATTTC TGTTCTGAAG TTTCCATACA GATGCCTTAG GCCAAAGTTA 002000 002001 GTACAGCCAA TATTTGCCTG TTTCTTTGGA TTGTGTGTCC ATGCTGGAGA AAAGCCTTGT TACTGTGCCC AGTGTGGTAA 002080 002081 ACGAAATTAT ATGTACGCAG TGAGAAGAAA AATGAAATAA GAAGCACTGA TGAATGTACC CACGGGTGTG ACCTTGGGGG 002160 002161 CCAGTGTGTG GTTTTTATGA AATGAACGCA TGAATACGAG GACCCTAATT ATTGCTTTCA ACGGACAAAG TATGGTGAAT 002240 002241 ATATAGAGAA CGTTGCTGTA CAACACTGGC TGTGTCTCAA AGCGGCTTTA GAAGTAAATA TAGAAATTCT TTGGTACATG 002320 002321 GTATTGCATA GAAAAGTCAT TAAGAAAAAA GCAAGACAAT TTGTTAAGAC CTTGTTAAGT GGAGCTGGGG GATGATTAAT 002400 002401 TTTGTTTGTT TGTTTTTGTT GTTCCCTGGT AGAGCTCAAC AAACTACAGA CCATGGGCCA AATCTGACCC ACCGCTGCTT 002480 002481 TTGTAAATAA AACTTTATTG GAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT050827_smProtein_407:676 |
Length | 90 |
Molecular weight | 10255.7501 |
Aromaticity | 0.134831460674 |
Instability index | 45.2359550562 |
Isoelectric point | 8.70684814453 |
Runs | 11 |
Runs residual | 0.0196078431373 |
Runs probability | 0.049372902314 |
Amino acid sequence | MCIWGPPSLALSLIFLLQHSPNLSLLTPTTCHPSLTKDSQLKANSNWIEFFFCRNCGEVA SEAHKQNPTQTHKPFFGWYQLLYCRVWSK |
Secondary structure | LLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHLLLLEEEEEELLLLHHHH HHHHHLLLLLLLLLLLLLEEEEEEEEEEL |
PRMN | - |
PiMo | - |