NONHSAT050827

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT050827

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2520 nt

Genomic location

chr15+:99571773..99574279

Exon number

1

Exons

99571773..99574279

Genome context

Sequence
000001 GTTTAGTTTA GTTTAGTTTA GTTTAGTTTA GTTTAGTTTT TTAAGACAGG GTCTCGCTCT GTCACCCAGG CTGGAGTGCA 000080
000081 ATGGCATGAT CATGGCTCAC TGCAACCTTG GCGTCCCAGG CTCAAGCGAT TCTCTCATTT TTGTCTCCCA AGTGGCTGGA 000160
000161 GCTGCAGGCA TGCACCACCA TGCCTGGCTA ATTTAAACAT TTTTTGTAGA GAAGGGGTTT ACCAGTGTGG CCCACGCTGG 000240
000241 TCTTGAACTC CTGGGCTCAG GCGATCCTCC TGCTTTGGCC TCCCAAATTG TTGGGATTAT AGGCGTGAGC CACTGCACCT 000320
000321 GGTCCCCCAG AAGCTAAAGG ATGGTGCAGG TTCTGTTTTT AAATGTACCT GTTAAGTATG TATTAGCTCA AACAGAGTTT 000400
000401 ACCTGAGATG TGCATCTGGG GTCCACCCTC TTTGGCACTG TCCCTCATTT TCCTCCTCCA ACATTCTCCC AATCTCTCTC 000480
000481 TGTTAACCCC AACAACCTGC CACCCCTCCC TAACAAAGGA TTCCCAGCTC AAGGCCAATT CCAATTGGAT CGAGTTTTTC 000560
000561 TTCTGCAGAA ATTGTGGGGA GGTGGCTTCA GAGGCTCACA AGCAGAACCC CACCCAGACA CATAAACCTT TCTTTGGCTG 000640
000641 GTACCAACTC CTCTATTGCA GGGTATGGTC CAAGTAGGTT ATACAAGTCT CTACCTCTTC TAGCTGAAGC CAACCTCCCA 000720
000721 GGAAAAGGAT GAGAGGAGAA AGCCATCCTG CCTGGTGTGT GGATAATACC ACCACCAGAG TCTCCTGTAA TTTTGATTCG 000800
000801 ATGGCATGCA GCTGCGTGAC CTAAGGCACG TATCTCCATT CACAGGGTGT GGTCAGTACT CTGTGAATAT CAGGTGTTCT 000880
000881 GTCTGCCCTG TCTCCTGACT TCCTGGAGCC TGCCCTTACC CAGTGAGTCC CTGGAGGGAA CATTCTGGTA TCTGGCTGTG 000960
000961 AGCTGTCACA GACATGGGTT TCTTTCGGTT CCCAGAATGA TGGGATGCCA GCCGCTGGCT GCCCCCAAGA AACTTGGGAG 001040
001041 CAGGACAGGC TTGGCTGTCC CAGAGGAAGA GCCTGGCATT GGGCCAGGAG GCTCAGGAGG GAAGATGAGC TCATTCTGCC 001120
001121 CAGCTCGGTT CTCCCGTATG CAGACCAGGT CATCACAGGG ACCTGCCTCC ACATTTGCAT CCCCCACGGC ATATTTTCCC 001200
001201 AGCACATGCA GCATTGGGAA CTTGAACGTC CCTCTGCTTT TCCTTGGTGA GACCCACCAG CCCCGCCTTA GGAAGGAGGC 001280
001281 TGAACATTTG ACGGAGCTTT CCTGTCACCT GTGAGCGACG TGCACGCTGC TTCCGAAGAA AGAGACATCC CCCTACTGTT 001360
001361 TTCTCACAGT GGGATGATTC AACTTTGTCT TTCTCACAAT CCCAGATAAT CATATCTTCC CAGGTTTTGT CATCTTTGAG 001440
001441 GACTACTCAC TATCTAGTTA TGAGTCAAAC AAAACCCAAT TTAACTGATA AGTAACCAGC CATCACGTAT CCCTGAAGAT 001520
001521 AAACCTGGTT TATCCTTTTT ATACCCTCTG GCAGAGCAAA GGAACAAGGA GTTTGGGAGA GAAAAAAAAA CACAACACTA 001600
001601 GAAACAGCAC TGACACAGGT CGTTAAATAC AGATGTGACC AGCCTTGATT ACAAGTGTTG TCATCCTCTT TTAACAGGGA 001680
001681 CCTACCCCGA ACTTTCATGA ACCCCTGGTA GCTGAATAGC AGCTTGTCTA AGCGAGGTGC AGGCATTTTG TCAAAGTCGG 001760
001761 CCTCGGTGTT AAAGGCAGGG CCACCTACCA TGAACTTCTC TCTGTGACTT TATTCTTTAG CAGTGCTCAA GTGTAAATAA 001840
001841 ACTTGTTTAC CAGGATCAGA ATGGCCATGT TAATGAAGTC TTATTTGTGT CACCACAATG ACAAGTAATT TGTGCACAGC 001920
001921 TGGACTCGGA GAGGGGACAA AACCAGAGAA ATTGTATTTC TGTTCTGAAG TTTCCATACA GATGCCTTAG GCCAAAGTTA 002000
002001 GTACAGCCAA TATTTGCCTG TTTCTTTGGA TTGTGTGTCC ATGCTGGAGA AAAGCCTTGT TACTGTGCCC AGTGTGGTAA 002080
002081 ACGAAATTAT ATGTACGCAG TGAGAAGAAA AATGAAATAA GAAGCACTGA TGAATGTACC CACGGGTGTG ACCTTGGGGG 002160
002161 CCAGTGTGTG GTTTTTATGA AATGAACGCA TGAATACGAG GACCCTAATT ATTGCTTTCA ACGGACAAAG TATGGTGAAT 002240
002241 ATATAGAGAA CGTTGCTGTA CAACACTGGC TGTGTCTCAA AGCGGCTTTA GAAGTAAATA TAGAAATTCT TTGGTACATG 002320
002321 GTATTGCATA GAAAAGTCAT TAAGAAAAAA GCAAGACAAT TTGTTAAGAC CTTGTTAAGT GGAGCTGGGG GATGATTAAT 002400
002401 TTTGTTTGTT TGTTTTTGTT GTTCCCTGGT AGAGCTCAAC AAACTACAGA CCATGGGCCA AATCTGACCC ACCGCTGCTT 002480
002481 TTGTAAATAA AACTTTATTG GAAAAAAAAA AAAAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT050827_smProtein_407:676
Length 90
Molecular weight 10255.7501
Aromaticity 0.134831460674
Instability index 45.2359550562
Isoelectric point 8.70684814453
Runs 11
Runs residual 0.0196078431373
Runs probability 0.049372902314
Amino acid sequence MCIWGPPSLALSLIFLLQHSPNLSLLTPTTCHPSLTKDSQLKANSNWIEFFFCRNCGEVA
SEAHKQNPTQTHKPFFGWYQLLYCRVWSK
Secondary structure LLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHLLLLEEEEEELLLLHHHH
HHHHHLLLLLLLLLLLLLEEEEEEEEEEL
PRMN -
PiMo -