NONHSAT050878
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT050878 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2356 nt |
Genomic location |
chr15-:100255902..100273596 |
Exon number |
3 |
Exons |
100255902..100258027,100260989..100261171,100273550..100273596 |
Genome context |
|
Sequence |
000001 ggtcgcgagt cgccggtcgc cggtcgcggC GGAGCCTGGG CGCTGAGgaa agatctagga gagagggaga aattgatgct 000080
000081 gccagaaaga ggggacagtt acagaagcga agaccttgag aaggagatga tgagacccag gatgcaacac agaaggcttg 000160 000161 gacttagata agggcaccaa ggtccctcga cagtgcctgg agggaagatt cctggatatc acgtgagaag CTGCGTTTGC 000240 000241 TTTGGTTAGC TAGAAAGCAG GCCCATCATG CATCTGTAAG AAAGTGACTG GAGTGTAGGC CCTGGCGTCT AAGCCGAGTA 000320 000321 AGATGCCCtg tcaatctggg tcctctggga agcaagactg atgaaatgag gagcaccaaa gctttaCACC CCAGCTATGT 000400 000401 GCATTTGGGG CTGGGGCTGC CTGGGAAGAG CTCGTCCTCA GCCCAAAGCC TGCAACAGCT GGGATCAGGG CTTACCTCTC 000480 000481 ACAGACGGGG CTCAGCAACT TTCTGCGGGA TGAGGACACA AGCCCACTTG ACCTGGAACG TCTGAAACCT CCTGGCCCCG 000560 000561 TGGAAGATGG GAAGAAACAC TCCTCTTCCT CTCAGTTTTA CAACCGAGTG GTCCTCGGGC TGCTTGTGAG CACCGGACGA 000640 000641 CCGACCGAGC AGGCTGCAGC CAATCAGCTG GCACAGGGCT CCGACTGAAA ATCATCTTGG CTGGTGCCAC AGAATCGGCC 000720 000721 TGAAAACAGG ATACTGCCTA GAGCAAGGCA CCCAGGGGAG CCAAGCAGGA AAATGTAATG AATTGACTTT AAGTAGCTGC 000800 000801 AGCTGTGATT AGAGTATTTT TAGCCACAGG ACTCAACCAG CTTTCAAAAC CTGCTAATAA GAGCCCCACC GTAGCCAGCG 000880 000881 CAAAAATTTA GTTTTCAGTT TAACACCAGG AATCTGCTTA GCTAGGAGCT GGCTTAGAAG GCACATCAGG AGAGAACATC 000960 000961 TTCTACTGAA AGTTGAAGAT TTTTCATTTT CTAGCTGAAT TATGACAAAG GGAGATGACC ATTAAGTGCC TGCCAGCATA 001040 001041 CTGGGACGTA CACCTAACAC TCTGAAAACT CAATTCATGC CAGCACATCT GTCTTCTGCT GCATCTAGCT CAGCATCATG 001120 001121 TATGTATTTT GGGCAAAACT AATCATTTCA CACCCTAGAC TTTAAAGAGA CCCAGAATCT AATGATAGCT AACATACCCA 001200 001201 CCCCCTCTAA CAGGCTTTGG CGTATTTCCT GTGAGAAGCA GTTACTGGAG GCCGAATGGA TTCCACTCAT CCACAGCACT 001280 001281 GTGCATGCAA CAGCCAGATT AGGCCCCGGT GGGACTGCGT GGCCCACTGC TTCCTATGGG CTCCAGGGCT GCCCAGCAGG 001360 001361 GATGACCCGG GAGCCGACAA GGGGGAGGCC AGTGGGGGCG TTGGGACGGT TTCCTTGACC CTGTCTCAAC CCAGAGAAAG 001440 001441 AAGCCTGCAG GTGAAAAAGG TCTTCGTGAA AGGAATGAAA AAGGAGAGGG CTTTAGGGGA AGGGGCTGCC TGGTGGCAAA 001520 001521 GCCAGCGCCT TGTGTCCCCA GGCAAACATG ACAGAGTCTC GACGCACAGG AAGAGCCAGT CCGTCTTTAC TGGAGTGAGT 001600 001601 GCGGGAGACA AACAGTTTAC AACAACCTTT AGCATTGTCT TCACCATTTG ATAAAAAGTT CACTATTATA TTTATTGTAT 001680 001681 AATGAAGAAA AACAACACAT TCAGGGAAAA ATTGAGATTA ACTTATTTTT CTTAAAAGGT TCATCTCAAG GATGGCAACA 001760 001761 AAGTCCAGCT TGTGCCGCCA AACGGTTTTA CATGATCAAA CCGTGTACAG CTTCTTGTGT GAACTGTTGA CTACAAACAT 001840 001841 TTACCAAATA CATAAATCTC TTTTAAAAAA GCCATTTTAA ATATAGCAAA GCAGTGTCTT CTTGCACAGC AAAGTGAAGA 001920 001921 AAGTTTCTAC AGAGAAATAG AAGTTTTACA TTTGTAAAAT CTTTTTCACA TTCTAATCAT CTAGCTTAAG ATCCAATGCC 002000 002001 AGGAGTTTTC AGCTTCCTTA TTTACTATGT ATTTCTTGTG CGCATGATGG TTAATACAGA AATTATGTTG ATGCATTACT 002080 002081 AGTTATCCTT CTAGTTAAAG GAAAGGGTAA AACATGTATT GTTCTTGTAG AACAAACCCC TGATTTAGTC TATAACAAAA 002160 002161 TGGACATAAT TGGGCTCAAA AGATGGAGTT TTGATTGGGA CCACCTGTGT ACACACAACA GTGACTTCCA CTCGCGGTGG 002240 002241 AGTGGCCATT AGAGTACTGA GGAAGGACAG CTGTTGGAAA CTGTACTTTA ACCAGTGCAA TTTAAGCTTT TTTTGCTTTT 002320 002321 GTTCTTTAGT AATAAAATAC TTCTGGAGGG ATAAAA |
Predicted Small Protein
Name | NONHSAT050878_smProtein_1181:1417 |
Length | 79 |
Molecular weight | 8420.6516 |
Aromaticity | 0.0641025641026 |
Instability index | 41.9025641026 |
Isoelectric point | 10.0676879883 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.0317866886495 |
Amino acid sequence | MIANIPTPSNRLWRISCEKQLLEAEWIPLIHSTVHATARLGPGGTAWPTASYGLQGCPAG MTREPTRGRPVGALGRFP |
Secondary structure | LLLLLLLLLLLLEEELHHHHHHHHLLLLLEELLEEEEEELLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |