NONHSAT052768
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT052768 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2733 nt |
Genomic location |
chr17+:28781039..28783881 |
Exon number |
2 |
Exons |
28781039..28783369,28783480..28783881 |
Genome context |
|
Sequence |
000001 gcctccaggc ctttgatggg aggggctgcc gagaaggtct ctgacatggc ctggagacat tttccccatg gtcttgggga 000080
000081 ttaacattag gctcctggct acttatgcaa atttctgcag ctgggttgaa tttctcccca gaaaatgggt ttttcttttc 000160 000161 tattgcatag tcaggctgca aattttccaa acttttatgc tttgcttccc ttataaaact gaatgccttt aacagcaccc 000240 000241 atgtcacctc ttgaatgctt tgctgcttag aaatttcttc cgccagatac cctaaatcat ctctctcaga ttcaaagttc 000320 000321 caaaaatctc tagggcaggg gcaaaatgct gccagtctct ttgctaaaac ataacaagaa tcatctttgc tccagttccc 000400 000401 aacaagttca ttatctccgt ctgagaccac ctcagcctgg accttattgg tcatatcact atcagcattt ttgtcaaagc 000480 000481 cattcaacaa gtctctagga agttctatgc tttcccacat tttcccatct tcttctgagc cctacaaact attccaacct 000560 000561 ctgcctgtta cccagctcca aagctgcttc cacatttttg ggtatctttt cagcaacacc tggctctatt ggtaccaatt 000640 000641 tactgtatta gtctgttttc aaactgctaa taaagacata ctcgagactg ggaagaaaag gagatttaat tggacttaca 000720 000721 gtcccacatg gctggggagg tttcacaatc atagcggagg atgaaaggca cttcttacat ggcagtggca agagagaatg 000800 000801 agaaggaagt gaaagtggaa tcccctggta aacccatcag atcttgtgag acttattcac tatcacaaga atagcatggc 000880 000881 aaagacccgc ccccatgatt cagtcacctc ccactgggta cctcccacaa cacgtgggaa ttctgggaga tacaattcaa 000960 000961 gttgagattt gggtgggggt acagccaaac catatcaGAT AGGTTATTTA TATATTCCCT AAATTATTTT GTAAAGCTGG 001040 001041 ATATGCTTAT TCTTTTTGTT TTTTTAATAA GATTTTTCTT TAACTTGCTT AGAGTCATTA GTATATACAC ATCCTGAAGT 001120 001121 ACATAATAAA ACTCAGACTA ACCTACCTTC TGTAATGTAT CTTTCTTGCT TGAGATAGTG GCTTATGGAG AAATAAAATA 001200 001201 TTTATCTACA AATTTTTAAG TTAGCATTTT GATTGTATTC AAGTAGAGAA TATTTTCTTA GATACTCATA CTAAGATTTA 001280 001281 AAATTTGATA TTTTATATTT GACTTTTCTC TTTTTTAGAT AATGCCTCCC AACCTGAGAC CAAAGCCATC ATTGAAAATT 001360 001361 TGATTCAAAA ACAGGACTTT AGTCTTTCTG TTGCCTTAGA TGGTGGTTCC ATGCTGGTCA CATATCCTTA TGACAAGCCA 001440 001441 GTACAGACAG GTATGTAGAA TGTCATTTTA TATATATACT GTTTAAGCTT AGGTAGCAAA TCCCAATTAA GTAATGTCCC 001520 001521 TTCCACATTT TTATAAATAG TGAGCATTTG AGCACACTCT ATGAGCAAAT TACCAACCAA AGAAGATTGT ACATACATCA 001600 001601 GCAGTTCAGT TACTTGGAGA GCTCAGATCT AATGGTAGCC CAGCTTTATT GAGTCTAGCT ATCTTGTTCC ATCTGTtcca 001680 001681 tttagtccac aagcatttac tgagcaatta ttatgtctgt aaatattgag aatataaaag tgagtatgac acggtttctg 001760 001761 cctcatgaaa ctcCTATGTA ACCAAATACT AACAGTACAG ATTTGTCCTT CCCTGTTTTA AACTTTGACT AAGTGGTTGC 001840 001841 ACCTTATGGT GAGTTAAATA GTTGGTTGTT TAATCTCTGT GGGGTCGCAG TATATGGAGA TAGTTTGGGT GGTTTTCAGT 001920 001921 GCATCTTACA AAGAATATTG TTATTAGGCT ACAGTTGTCC CAAAATGCAG TAAGACATAC CAAAACAAGT TTGTATTTTA 002000 002001 GTGTGATAGT CTGTTGTGAA AACTCACCAT TAGAACCTTT TCATGTAAAG AGGATGTTTG TCTTCTATTA TCTTGGGCTA 002080 002081 AATAAAACCT TTTAGGGTTA ATTATAGTAA CAGTATACTT AAGTGGAGTG CAAAATTTAT TAGGAGAAAA AGATGACTTG 002160 002161 TATCCATGAA GGTTAACTTG GGGGAAAAAA ATCATTTGGA TTTCTCCACT GACTTCTAAA TTTTTCTTTC TATAGTGGAA 002240 002241 AATAAAGAGA CTCTGAAGCA TTTGGCATCT CTTTATGCAA ATAATCATCC ATCCATGCAC ATGGGTCAGC CCAGTTGCCC 002320 002321 AAATAAATCA GATGAGAATA TTCCAGGAGG AGTAATGCGT GGAGCAGAAT GGCATAGTCA CCTGGGCAGC ATGAAGGTAT 002400 002401 GCTTTCTAGA ACATGGTTAG AATGGAGTTA Tggccaggca caatgccgta tgtgtaaacc cagtgctttg ggaggccaag 002480 002481 gcaggtggat tttctgagtt tgggagttca agaccagcct ggccaacatg gtgaaacccc atttctacta aaaatataaa 002560 002561 aattagctgg gtgtggtggc agacgcccgt aatcccagct acttgggagg ctgagtcagg agaatcgctt gaacctggga 002640 002641 ggcggaggtt gcagtgagtc gagccgagat cgcactactg cactccagcc tgggcaacag agcaagattc catctcaaaa 002720 002721 aaaaaaaaaa aaa |
Predicted Small Protein
Name | NONHSAT052768_smProtein_506:763 |
Length | 86 |
Molecular weight | 10142.4825 |
Aromaticity | 0.211764705882 |
Instability index | 65.8788235294 |
Isoelectric point | 9.34283447266 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.0595097359805 |
Amino acid sequence | MLSHIFPSSSEPYKLFQPLPVTQLQSCFHIFGYLFSNTWLYWYQFTVLVCFQTANKDILE TGKKRRFNWTYSPTWLGRFHNHSGG |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLEEEEEEEEEEEEEEELLHHHHH LLLLLEEEEEELLLLLEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiii |