NONHSAT053849

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT053849

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3023 nt

Genomic location

chr17-:41453296..41466266

Exon number

4

Exons

41453296..41455181,41456491..41456630,41458641..41459028,41465657..41466266

Genome context

Sequence
000001 GGAGGAGGGT AAAGGAATCC ACGTCCCAAG CAGAGAAGCA GCTTTCCCTA CACAGCACAG GACACGGTCC GCGCACAGAA 000080
000081 GCCGCAGGAG ACGCAGGCAC AGGGGCTGGG GAGAATCCTT GCTGGGCCCT CGCCGTCCAT GCGCCGCCTC CCTCTGCCCG 000160
000161 GTGTCTGGTG TCAGCCTCCT GCCTGGCAGA GGAACTCCAG CCCCTGCTCC CCGAAGCTCC TCCAGGCCTT CTGCTTCCCT 000240
000241 GACTCGGAAT GGGCCCGCTG TCCAGTGGGT ACAAGGCTGG TCTCCCCGCC CACTGGTGAC GACGTAAAGA TCCAGCTCAG 000320
000321 CCTGGTTTCC CCTGGTGATG ATATCTTGCG ACTCGTCTTT CTCCAGGAAA ACAGGGACCG CTCTCCGCCT ACAGGTCTCT 000400
000401 TCCACAGACC TATCTTGTTT TCACCCCCTG TCTCTTTTGG TTCAGTCTTT TCGCTCATAC AAACAAGGAA GTCGCCCCTA 000480
000481 GCCCAGCCGC GGCTCCTTAG CTGGAGGCGG GCCCGGGGGT GGAGTCAACC GCGGTGGCCA CGCCTCCTGG GAAAGGGCAG 000560
000561 GGCATGCAAA TTCGAAATGA AAGCCCGGAA ACCCCGGAAC TAGAACTGGT ATCTCTTCAA CTACCTGTGA AAACTGATGT 000640
000641 GATGAAAAGG GGAATTTGAA GGAGCCATTC CAGAAGACAG GGCGAAAACT GAAGTGCAAT CAGGGCCAAG AAAAACAGAA 000720
000721 ATAGCAGGAC CTGGAGTTGC ATAGGTTGAA TAGTTGAATA GGCTGCTCTC CTCAGCTGGC AGGAAACCTG GCAGCCTCCT 000800
000801 GGTGCCCAAG GACTGAAAAC CTTAGAAGCA CCTGGAGTTG GCAGCCTTGG CATGGTCAGG TTGGCACCTC TGGAGGTGCC 000880
000881 CAGGCTTCCC TGGCAGCATT GTGAGCAGTG GATGGTGTTG AAGGGCAGCC AGAGGAGGAA TGGAACACAT GCTCCTTGCT 000960
000961 AACCACACGG ACAAGGCCAC GTTCACAGGT ACACAAAGGC AACGCAGTTG CTCAGGTGCT TCGGTATCAC AGCCAAGACC 001040
001041 CCTTCGGGGG AAGCTAGTCG GATACTGGGA CCCACATTCC AGACTACTGA GCCGCGGTCG CGCCCTCGGC TCCGTTTCTG 001120
001121 CTCCCTCCAC CCCACGAGGA CGGGGGTGGA AGGCCACCTT CGATGGGTGC ATCCTCCACG ATGACCTGCT AACAAAGGTG 001200
001201 CATGGATTTC AGAGTCTGAT TGGCCTACAA CAGCATTTGG CTTGTGGAGA CAGTGGTTCC CTGATGAAAA ACTGCCATGA 001280
001281 TGTAAGGAAG AGCCTGTCAG AGCGAGGCTG GGGTGCTGCG TGTTGGGGAG GTGGAGGTGT GGCTTCCCGG GAGAAGCTCC 001360
001361 ACCCGCTGGC TGAGTCTGGC ACATAAACCA GTCTGTGAGG GGATGGATGT GGGTGTAATG GGGGCAATTA CAGTAGGAAG 001440
001441 GAGCCCACGT GGAGCCTGCA TTCTCTGGGA CAGGGCATTA CTGCATTCTC TGGGACAGGC TAAGGCCCAG ATCCTACCTT 001520
001521 CCCAGGTGGC TGGATGGGTC ATAGATGTAT GAACCGGTCC CCTCATTTTC TGATTGCCCT GTGCTTAACG TTTCTGTACC 001600
001601 TTTACTGAGG CTCTTTCCTC CAACTCCAGT GCCCAGACCC CCCTTCTCCT GAACATGAAT GCCTGTCCAT GGAAATTCGA 001680
001681 GTCTCTCTCT CTCACCCAGG CTGGAGTGCA GTGATGCAAT CTCAACTCAC TGCAACCTCT GCCTCCCAGG TTCAAGTGAT 001760
001761 TCTTGTGCCT CAGCCTCTGG AGTATCTAGG ATCACAGGTG CGTGCCACCA TGTCTGGCTA ATGTTTTGTA TTTATAGTAG 001840
001841 AGATGGGTTT CGACATATTG GCCAGGCTGG TCTTGATCTC CTGGCCTCAA AGTGATCTAC CCACCTGGGC CTCCCAAATT 001920
001921 GCTGGGATTA CAGTTGTGAG CCACCACACC CAGCCTGTCC CTGAAATTCT AATGAAATGT GCGATAAAGT TGTTTTGTTT 002000
002001 TTCTTTTTGT TTTCCCTTCT TGGCAAAGCC TGGTGTTTCT ATTTTAGTGG ATTTGCCTGG CACTGAGGAC TGCTATGGTG 002080
002081 GTCTTCAGAG GCTCCTGGTA TTGACTGCTT GTGAAACCGC TTTTGCAAAA TTATGACTGA GACAGTGAAA GAGATCTAAC 002160
002161 TTAACCGACC CAATCTTGCT TCTAACCTCC AAATTGTCCT TATTCATTCC TGAGCATAGC CTGAACTAAC TTTGGGAGAA 002240
002241 GCTTAGTTTA TATTTTATTT TATAGTTTAA AACAAAGATG TTAACAGCCC TTTCCCAAGG CAGACTTCCT TCTTGCCTGG 002320
002321 GGACTAGGTT GCCTTTGGAG GACTAACATT AGCCACGAGA TTAGAAATTA TGGGCTGGGC CTCGTGGCTC ACCCCTGTAA 002400
002401 TCCCAGCACT TTGGGAGGCC ACGGCAGGTA GATCACCTGA GGTCAGGAGT TCAAGACCAG CCTGGCCAAC GTGGTGAAAC 002480
002481 CCCATCTCTA CTAAAGAATA CAAAAATTAG CCGGTTATGG TGGCACATGC CTATACTGCC AGCTACTTGG GAAGCTGAGG 002560
002561 TGGGAGGATC GCTTGAACCT GGGAGGCGGC GTGGAGGTTG CAGTGAGCCA GGATCTTGCC ACTGCACTCC AGCTTGGGCG 002640
002641 ACAGAGTGAG ACTCTGTCTC AAAAAAAAAA AGTTTAGAAA TTATGCTTTA GGAGTCATGC AGCTGGAGGC TACAAGATTC 002720
002721 TGACCCTCCC TAAACTGCTC CTAAGATCAG TGCTTGAGAT ATTTTGCAGA CCCTGCACTT GATGGATCAG CTGGCACCAC 002800
002801 CCAGACTGAT TAACTGGCTC ATGTGATCTT GTGGTCCCCA CCCAGGAACT TAATCAGCAC AAGGAGACAG CTTCAACTCC 002880
002881 CTATGATTTC ATCCCTGACC AATCAGCACT CCTGGGCTCA CTGGCTTCCC CCTACCCACC AAGTTGTCCT TAAAAAGTCT 002960
002961 GCTCCCCAAA TGCTCGGGTA GACTGATTTG GGTAATAATA AAACTCCGGT CTCCCACACA GCC
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Predicted Small Protein

Name NONHSAT053849_smProtein_1658:1894
Length 79
Molecular weight 8234.3089
Aromaticity 0.0512820512821
Instability index 64.641025641
Isoelectric point 6.93072509766
Runs 7
Runs residual 0.0439337085679
Runs probability 0.0423827188534
Amino acid sequence MPVHGNSSLSLSPRLECSDAISTHCNLCLPGSSDSCASASGVSRITGACHHVWLMFCIYS
RDGFRHIGQAGLDLLASK
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEE
LLLLLHHHHHHHHHHLLL
PRMN -
PiMo -