NONHSAT060084
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060084 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2309 nt |
Genomic location |
chr18+:77852969..77855277 |
Exon number |
1 |
Exons |
77852969..77855277 |
Genome context |
|
Sequence |
000001 AATTATAATT TGATATTTAT TAGCCATAAC TAAATATTGC CATGATGCAT TGCTATTTGT TCCCTCCTTT TCCCTTTGTC 000080
000081 TACCTATATA ATCAATCTTG TAAGGTCCAG TAACAAAGTG AATTATTGGG ACTCTTGCTA TTTTCCTATC ACTAATGGAC 000160 000161 AATTACAACT TGTCTTTGAT GTTTCTATTC TTGTTCTAGC AATAGCGTTT ATGGCAGCAT TTAGCGGACA CAGAAGCACA 000240 000241 TCTGAAAGTG GAGAGAGACG CGTTTCCCCA TTGCTGGCCG AGTCCCACCA CTTTGCTCAG CTATGAACAC CTGACATCTC 000320 000321 GTTTCATTTT CATGCAAAAT CTGGAGATAA TTATTATCCA CAATTCTAAG GCCTTAGGCC CCTCCGCATG AGCCTGCCAT 000400 000401 TACCACTTCA TTCCCTTGCA CCTGAAAGAC TCCAGAGCCC CTTGAAAGAA CAGGTCCTCC AAGAGGAGCA TCGCCAGCCA 000480 000481 GCCCCTGAAT CTCCTGAGGA AACTCTCATG CACATATCTT GACCTGAGCA CAGACCGGAC GCCAGCGGAG GGCAGGAGCA 000560 000561 AGCAGGACAC ACTGTGGCTG AGGAGGGGAC CCTGGGCTTG TGGGCCTCGG AGAGGCAGAG CAGGGGAGGC AGATGAGACT 000640 000641 GCACACAGCT TTTTGTTTGA CATATCCTAA GCCCCCTGCA CACGCCACTC AAGGTCTTCT CTGTGCCCCA TCTGGTGCAG 000720 000721 GAGGCCTGTC TGTCTGTGAA ATTGCTTTTA GCAATAGCTG TGGATCACCA Ctgagagggt gaatatacaa atgaacaatg 000800 000801 ggcagaccgt ctatgatggc aaaacttgga cctccaacct TGAGGCCAAA GCACATCATG TGCGGCCTCT GGCGGGACTC 000880 000881 AGGTCTGGGA AGCGactgca gcttccctat tttctagctc tgcttccaac taagaaagtc agatattctc cccaaaccaa 000960 000961 ccccatagga tgcctgctgc caggtggccc acccccagct tccccctgac aacagcctcc acccagggca tacccaacca 001040 001041 gagccttccc atcttctaat gggaagcttc ccctccccac cccaccttca aggctctgcc acgcgcaggg acagtgtagc 001120 001121 cttcttggct acagcttcga gtgagcagcc tctgcCATCC TCGCTGATGT CCCCGGTTAC CGTGAAGGCT CCTCCAGGAC 001200 001201 ACTGTCTGCA CTGCCTGTCG TCCAGACCCC ACCTCTGCCC AGGCACCCTG GCCTTAATGC TGCAGCCCAC AGGGCACCCA 001280 001281 GCTGGTGACT GAGGCCTGTT CTGAGCCCCT CGCTGGCACA TTCCTGGACT TCTCAGTTTG GTGCCAGGGC CTCATTCCTG 001360 001361 CTTCCCATTT GCTCTGTTAC AGGGGAATTA GTCCCTTCCT TTACTCTTTT GTGCTGTGCT TTCTAAACGT GGTGTTTGTC 001440 001441 ATAATAAGAA GCATGAGGGG CACAtggatc agcctcacag acaggtgagt ctgtagctct taccagaccc ttgttcacat 001520 001521 ccatgaactt ggctgtggat caccagggaa actgggtgag gttctgccat ccaggggttt tgtcctgaga acttggcttt 001600 001601 tagaacattc tctctggttt tttgcttggg ggtgggggtc tggtgcaggg tgctgggtct gtgtttggag gaggccagcc 001680 001681 cgtaggctgg gggcctgaga cactgtgcac tggcgtgatg cgtctgccgc ccatcaccag cttgcagggg catccacggc 001760 001761 tgaatcctct gctcttccag gaaagactta tgcttctcat ggtcctagtt ctcatgctga tctttctact tggcaaaatt 001840 001841 caccaagggt gacttgggtt tttggtggca actctgggaa catttggctt gaaaaattgt tcatttaaga gattctttag 001920 001921 agaagaaaat gagtaagatt ccctaggcct aaatgcagag gcctccaaat gaatttctga ataaaaaagt atttcgctaa 002000 002001 gagactgttt ggccaatgct aatgactgac ttgacaaacC Gcccctcacc cgcctgccct ccatgtcccc ctgtgtctag 002080 002081 ccctcctcct ccccctcgtc ctttcctgtt tctctccttc cacacctccA TCAACTGCTT CCTCCTGTCC CCTGTATCCA 002160 002161 GATGCCCTAC CTTTTCCCAA CAATTCTCCC ACCACGCTGT AACCTAAACT TCCCCCATAT TCCTTGAAGC TGGAAACAAA 002240 002241 GGGCTGACAG CAATCATTGA AGGCCTTGGA TCCAAAGTCC TTCTCATGCA CTTCACTAGC CCTTATCAC |
Predicted Small Protein
Name | NONHSAT060084_smProtein_1058:1291 |
Length | 78 |
Molecular weight | 7939.0562 |
Aromaticity | 0.025974025974 |
Instability index | 93.8688311688 |
Isoelectric point | 7.83343505859 |
Runs | 10 |
Runs residual | 0.00621118012422 |
Runs probability | 0.0452835188129 |
Amino acid sequence | MGSFPSPPHLQGSATRRDSVAFLATASSEQPLPSSLMSPVTVKAPPGHCLHCLSSRPHLC PGTLALMLQPTGHPAGD |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLEEELLLLLEEEELLLLLLLL LLHHHHEELLLLLLLLL |
PRMN | - |
PiMo | - |