NONHSAT063892
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063892 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2405 nt |
Genomic location |
chr19-:23489611..23541647 |
Exon number |
2 |
Exons |
23489611..23491899,23541532..23541647 |
Genome context |
|
Sequence |
000001 CAACGCTTTT GACAAGTCAA ACTTTTCTAA ACATCAAGAA AATCATGCTG CTGAGAAATC CTAGAAATGT GAAGAATGTG 000080
000081 ACAAAGCCTC TAAATGATTG TCACACTTGA TCGTAGggcc cagacagaag agaagagtca catcatctag atgatgaatg 000160 000161 aaaagatatg tcattattct cctttgggca gtgcttctgc agaaaagttg caccttctag gtgttggact cagcaatata 000240 000241 tcacaatgtc tgcagtattt tggaaggaga ggagagtcac cattacttag gtgctaggcc cagcaataca tctcaagcac 000320 000321 ttcttgggca aagcccaagc agtaaaaaag agtcacatta cctaggttct gggtatagca atatgtcaca aatgccccta 000400 000401 agaagagggc ccaggaaaag agagtcacCT TGGTGAGAAT GTCAGAGATA TTCCATTTTT GGGTATTCAC AAAAAAGAAT 000480 000481 AAAGTCCCAT AACCTAGAAG Gtgggctctg ctccatgaca caaatcaccc tagtgggcag gtccattaaa gagaaggctg 000560 000561 tcaaagcaca tagatgctgg gcaaagtgat atgtcataat ccccatgatg ataggcccag agacatgtca caatgacctc 000640 000641 tttaggcaga gaccaggcag aagaatcaca tcacttgtgt gctggcccta gtgataagtc actctcattt ctgtggacat 000720 000721 ggcccaggca gaagagcaga gtcacattac ctaagcgctg ggtcaagaga tatgtcacaa tcttttacat gggcaaaacc 000800 000801 caggtaaaaa agaggagtaa tatcagatag taggtgttgc cagagatatg tcaaaatgcc ccctgtatga aagactcagg 000880 000881 cagtcaaaac acattagttg gtttcttaac ctagtgatat gttataatct ttcctgtggg tatgatgcag gcagaagacg 000960 000961 agagtcatgt gatggatgca gagacatgtc acaaggtctt ctgtgggcag ggtccagact gaagccttcc acctgctagg 001040 001041 ggttgagccc aatgatatgt cacaataccc aaattatgca gggcccaggc aaaaaaaacg agaggcacat cacctgggtt 001120 001121 ctggatccaa tgatatatca caattttcta ttttggcaag acccaggcag aaagaaaagt tacatcacct aggtgatgaa 001200 001201 tgaaaataca tattataata gttttgtggg caggacccat gcgggagagt cacatcacct aggtgttgga cccagaaata 001280 001281 tgtcacaata tacagtgtat acagagctga ggcatgagac aatagtaact tcactcattt gttgagccca gctatacaat 001360 001361 ccttttttgg gcacagccga agtagtagag gagagttaca tcaccttggt gctgggtcca gcaatgtgtc accatacctg 001440 001441 ctgaggggag ggtacaggca agagagccac atcacttagg tgaggggccc agagatatct cacagtaccc cctgtgggta 001520 001521 gaactcagga aaaaggagag agtcacataa tctagaagct gagctcagct gtatgttaca atcacccagt ggacaggtcc 001600 001601 caggcatgag agtagagtca catcacatag gtgctggacc aagcaatttg tcacaacctt cactgtggac aggtccccag 001680 001681 aaaaagagaa tcacatcatt taggtaacaa aacctgagtt agtcactgtt acttgtttgg gcagaggtca ggaagaagtg 001760 001761 tcacacaaca tgtatgctgg actaagcaat acgtcactct ctctgtttta ggtatggccc aggcaggaga gaagggtcat 001840 001841 atcacctaag ctctggattc gcagataggc cccaatctct tttttgggca atgctcgggt aagagagcag agtcacatca 001920 001921 agtggttgat gggcccagag atatatcaca ttgccccttg tggacaggga ccaggcaggg gactcacatc acaatagagg 002000 002001 taggacaagg aatacatcac aatacgtttt gagagcagaa ccaaaaaaga gtaacataat ctttgtgttg agtgcagcaa 002080 002081 tatgttacac ttttctttgt gggcagaacg tgtaaagaag gaaaaagttg gccggacacg gtggcctgta atcccaacac 002160 002161 tttgggaggt caaggtgggc agatcacctg aggtcaggag ttcaagacca gcctggccaa catggcaaaa cgctgtctct 002240 002241 actaaaaata caaaaattgg ctgggtgtgg tggcaggcac ctgtaattct agctactcag gaggctgagg caggagagtc 002320 002321 acctgaacct ttgaggcaga ggctgcagta agcaaagatc acgccactgc actccagtgt gggtgacaca gcaagactcc 002400 002401 atctc |
Predicted Small Protein
Name | NONHSAT063892_smProtein_2081:2350 |
Length | 90 |
Molecular weight | 10385.8429 |
Aromaticity | 0.101123595506 |
Instability index | 64.595505618 |
Isoelectric point | 10.565246582 |
Runs | 16 |
Runs residual | 0.0365719321436 |
Runs probability | 0.0464913442855 |
Amino acid sequence | MLHFSLWAERVKKEKVGRTRWPVIPTLWEVKVGRSPEVRSSRPAWPTWQNAVSTKNTKIG WVWWQAPVILATQEAEAGESPEPLRQRLQ |
Secondary structure | LLLLEEHHHHHHHHHLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLEELLLLLLEE EEEELLLLEEELHHHHLLLLLLHHHHHLL |
PRMN | - |
PiMo | - |