NONHSAT067654
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067654 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3207 nt |
Genomic location |
chr19-:53741850..53745056 |
Exon number |
1 |
Exons |
53741850..53745056 |
Genome context |
|
Sequence |
000001 TGAAAGAGAA CATTAATTAA TCTGTCACAG TATCATTCTG CTACATAGAG GTGCCTCTTG AAGCCACTGA GTAGAGTAGC 000080
000081 CTGCATGTCC CAGTATGCTG AGAGAGAATC AGGACAGCCG GAGGGATAAG TGCTTCTGAC CTTCTGGTTT CTGTGGAGTT 000160 000161 TCCAGTGTCT CCCAAGGGCA GTGTGACAAC GCTGGTTAGA TATATGCTGA TCATCCTCTT GGAGCCAGCA GTACAAGGTG 000240 000241 TAGGAGTTTC TCCTGGGAAG AGCATTCTCC AAGTTCTCAA CCTCATATCT GCGAACATGT TGACCAAACT GTTGCTCATA 000320 000321 CCACATTATT CATCCCATAC GTGCAGTTGT ACATTTTTCT TCAGTATGAT TTTTATGCCT TTATTGAGGG AGCTTACAAA 000400 000401 GTTGAATTAG GCATACATTT TTAAAGTTCA GTATAATTTG GTTAAGCCAC TGACACTTTC ATTTTGCCAA TGTCATTGGT 000480 000481 ATAAATGAAC TTGTATGTAT TTAATCAGCA GTTACATGTT TTCATGATAC TCTTAGTGTT TTTTGTTTTA TATCTACAGT 000560 000561 GTGTGGGGCC ATGAGATGAA TGAATATTGt tttattatat atattttttt CTGCTTCATA TACTTTCATG ATGTTTTATA 000640 000641 TGTTTTACCA GAAGATTTCT TCCTTGAGTA TTTATGTCTG AGTATTAGTT TCCTCAAAAC ATATATAACC TCCAAAACTT 000720 000721 TGTTAAAGGA TAGTATTAGT TATTCCTTTT ACTTCTGTTT CCTGTAACTT TATATCAACT CTTAGCTTAT ACtttttaaa 000800 000801 aatagacttt ctatttttta gcaattttat gttcacagca aactagattt cctgtatact ctgttccccc acacgtgcac 000880 000881 agcgtcttcc cccattatca ccatccccca tcacagtggt acatttgtta aaattgataa acctacattg acacatcatt 000960 000961 atcacccaaa gtccatagtc gatgttgggg ttcactctat gtatatgctt tgggtttggg caaatatata atagacatat 001040 001041 atcctccata atagtatctt acagaataat tacactgccc taaaaaatct gtgctctgtc tgttcatctc tccctccccc 001120 001121 cagcacctgg caaccactga tctctttact gtctccatag atttgccttt ttcagaatgt catatagttg gaaccatata 001200 001201 gtatatggcc ttttcagatt ggcttctttc acttaataat atgcatttca atttctaggg ctgggcgtgg tggctcacgc 001280 001281 ctgtaatccc agcactttgg gaggccgagg ccggcggatc acgaggtcag gagatcaaga cgatcctggc taacatggtg 001360 001361 aaaccccgtc tctactaaaa atacagaaaa taagccgggc gtggtggcgg gcacctgtag ttccagctac tcaggaggct 001440 001441 gaggcaggag aatggcgtga acctgggagg cagaggttgt gatgagccga gaccatgcca ctgcactcca gcctgggcaa 001520 001521 cagagcgaga ctccatctca aaaaatagat aaataaaata aatttcttcc atgtcttttt atagcttgac agctcatttc 001600 001601 tttttagcac agaataacat cccTTCATTG CACACACTGT GTAAAGAATG ACTCCTGCTT ATACACAGGA CAGCTTACTC 001680 001681 AGGACAGCAA CATGATCTGG TCACTGTCTA AACAACTTGT GCAAGATAAG GTGACTTAAA TGCTATCTGA GAGCAGTGGT 001760 001761 GCTGTCACAC TATAGGTGAC ACAGCTCAGG TCCCATAATC TGCCTTGAAA CATTTCTTCC TACACTCCTC GTATTTGCTG 001840 001841 TGATTTATAA TCCGTGCTGC CCTGGGTGGC CAGTGGTGCT TAATGCTGTG AACATGGCAT CTTAGCCCGC ACACACAGGT 001920 001921 TCAGATTCTG GCTTTCAGAT GTGCTTTCTC TGTGAGTTAG GGATAGATAT GTAAACCTCT TCAGCCCTTT GTTTTGGTAT 002000 002001 GAAAAGGTGC GATAATTTAC CTCAAGAGGA TTTACATCAA TTAGTGCTGT TAGAGACCTT AGTAACTTGC ATAGCATTTA 002080 002081 GTATGCTTTG AAAAGTTACC TTTATGAATA AGATATGTCA AGTGTCTGTC ATGTTTCTTA TGAGATTGAC CTTTGCCTTC 002160 002161 ATTATATCTT ACATATTTTC TTTTTTGTAA TTTTTTTTTT CATATCAACA TTTCTCTGAC TCTACATAAT AAAATGTTAA 002240 002241 AGCACACAGC TTTCATTATA TGTATTTTTT GGCCATAGAA CTGGAAAACT AGATGACATT TCCTAGTCAG GGAGTTTCTC 002320 002321 TATATACTGC TGTCATATAA CTGCAGGCAT GAAATTATTT CAGACTCCCC TCCTAATTCT TCATCTTTAT AGTAATGTGC 002400 002401 ATTTACCTGA AGCTGATATT TCAAAATTTA GTGATTCTCA ACATATTATT TTTCCTATTG TGTGTCCCTT CTGTTTTTTC 002480 002481 TGTAGTTCAT AAGCAGTAAT TCTTTAGAAT TTCACTGACA ATTTTGTGTA ATTGTGGTTG TTCATTAACT TGCCTGTTAG 002560 002561 ATTTTCACAG GTTACTAAAG TGTTTTATTT ATTTTTGTAA TGATTTACAG ATGATGGTTT TTCAGTATAT ATTATGCAAT 002640 002641 AGAACCACCA TGCACAAATT GTTAATGCTG CAAAATGCAC ATTCTACATG GGTGTAAGTA GTTTTATAAC AAGTACTCAC 002720 002721 ATTTGCAATT TGTAAATATT CAAAATTTTA TTAAATTCTT CCGAATTTTT TCTTTCAGTG TTTTGTTTGC AATTATGAAT 002800 002801 TGTCattttt aaatattttt tattaGATAA GCTTGAGCTG TGCCTTACCT TTTGTGTGTA ATAATTATGT ACTAAATAAT 002880 002881 GCATTACTAT TTGTTTATCT TCAAATATGA GACTACCATA TAGCTATGCC AATTTACGTG TTCCTTGGAG TGGTGGTGGA 002960 002961 AAAATACCTC TTCTTTCAGA GTTTATGTGG ATTTACATAG TATGAGTGTT TTAGCTATAG GGTGTTTTAA ACTGTGCTTA 003040 003041 AAATAATTTG TTACATGTTT TGTTACTGTG TTACTTTATT GAGGACAGCT AGTCCCTTTG TGTTGTTAAA CGTTTAAAGA 003120 003121 CAGTTGAGAA GCTTCATAAC TCTGTTCATT GTAAATCTTA GCTTTCTTGT AATATGTATT TTAATAAAAT ATTTACCTTG 003200 003201 CAACTCT |
Predicted Small Protein
Name | NONHSAT067654_smProtein_203:409 |
Length | 69 |
Molecular weight | 7548.1321 |
Aromaticity | 0.0735294117647 |
Instability index | 54.7941176471 |
Isoelectric point | 8.80426025391 |
Runs | 7 |
Runs residual | 0.037559618442 |
Runs probability | 0.0485527544351 |
Amino acid sequence | MLIILLEPAVQGVGVSPGKSILQVLNLISANMLTKLLLIPHYSSHTCSCTFFFSMIFMPL LRELTKLN |
Secondary structure | LEEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHH HHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTi iiiiiiii |