NONHSAT068790
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068790 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2674 nt |
Genomic location |
chr2-:4675812..4703805 |
Exon number |
6 |
Exons |
4675812..4676363,4676370..4677980,4682484..4682649,4698903..4699119,4700103..4700163,4703756..4703805 |
Genome context |
|
Sequence |
000001 AAAAGAGGCG GGGGTCTCAG CCTGGTTCTT CCTTGTTCCT CGTCCTCTGA GGTAGCAACT GCCTCATCTT TTCCATCTAT 000080
000081 GGAGTGTGGA ATATGTGCCC TACTTCATTC AGGAATGTTG GACAAACCAG CTATTTAGAG AGTGAAGGAG AGGAACTTCC 000160 000161 GAGAGCAACC GGCCCCCAAG AGAAACCCAG GGACTCCTGC CCTTCGGCAG CTTTGTCCAT GTGCTGCTCA CACCAAAAAG 000240 000241 CACTCGAGGG TGACCTGCAC CAAAAATGCA TTGCCGTAGT CTGGGCACAG TGGATCACGC CTGTAATCCC AGCTCTTTGG 000320 000321 GAGGCCAAGA GAAGTTAGAA CACTTGAAAT TAGCTAAGCG AGAATGCCAT CAGCAGTGCA TCGATCTCAG CTGCATCCAG 000400 000401 GTGTATCAGT TGAATGGCAG AGGGACTAGA AATTACATTT CACGAAGAAA ATTTACAGAA CTAAAGATAT TTAGGCTGCA 000480 000481 AAAGAAAAGA CTAAGGCACT GTGCTAAGTT GGACTTACAG AGATGAATAA GATTTGGCCA CATCTTCAAG GAGCTCAGAC 000560 000561 CTTCATGGAC ATACCAAATA TATACAGAAC TAACTCTACT GCTTATCATA ATGAGAGCTG TGCTATGGAT ATTTGAAAGT 000640 000641 TAGAGAGATT TATTTTCAAC AGAATAATAA AGTCAACTTT CACAAACTGG TGACAGATGA TCTGGGCCTT GCAGACAGGG 000720 000721 GAGGACTGAC AGATTGAGAA GAGTATTTGG TTAAAAACGG ATCATAAACT GGTATAAATA TCTAAACAAA CTCATGAGAA 000800 000801 TGAGCAGAGT CAGACACAAT AAAATAATTC AAAGATATAT CAGATAAACC TGGACCCAAA AGTCATGACT TTTTCTTTTC 000880 000881 AGTTAACTCT GAACAATTTA CAATAACTTC CTCAATTATT GTTTGTCTCA TTTTAACATT TTGTAATAAC ACCTATGTCT 000960 000961 CCATATTGGT ATGAAGATTA AATGAAAATA CATCTATGTT AGATAGTCCC TAAGTTTCTG TCCCTGATAT AAGTCCACCC 001040 001041 TCCCCACCAT CATGTGATCA CACGCAGGTG CACATGCACA GATGTATACA TGCATGCCGT TATGGGGACA GTAATTGCAA 001120 001121 ATATCAATAC TGTTATGGTT GTTACTTCAG CCATTGCACA AGTGTAGACC TCTGGATCAA CACACATACG TATGTGTATG 001200 001201 TGTAACAAAT ATATGGCTAA TAATGCATAG GTTTCATAGC TATACCTTGA AATCAATTTA TTAAAGGGAT GTGTCCTTCC 001280 001281 CATGCTGACT CACCTACTGC GGCCCAAAAG CAACAACGTA AACTGCCCTG GATAAAACAT CTGCAGACAA GAGATCTCTA 001360 001361 AGCTAAGCTA CAGCTTCATC AAGCATGGAG TTATCTCATT TCATAGCTTC ACACACACAA AGGCGCGCGC ACACACACAC 001440 001441 ACACACACAC ACAGCTCTCA GCTGGAGACC GTCAGGGAAA ACAAGTACCA GTGAGACCTG GGGATCTTCA TTTGATTTTG 001520 001521 TCTACTGGGT GAGGCTGTGT TGAAAACACT TTGACAGAGG GCTCTTCTCT TGGGGCTCAT CAAATATTGC TGGTAGAGGG 001600 001601 TTTGCTTGCT TTAAATATTC CTTTCCTCAG GTAACAAAGA ATACCATGTA ATTTGTAATG ATAACTTGGA TAATGAATGC 001680 001681 ACACTGTAGT CAGCCATTAC CAGTGGTAAT TGGTCTTCCT TTCATCTCCT GTCAAGCAGA GTGGTTAGGA TTAGGACCAA 001760 001761 AAGGCAGCTA TCATCTCTCT CATTTCCTGA CTCAGACAAA AGGCAAAAAA AAAAAGGTGC CTGCTTGTGC TGATAGGTGT 001840 001841 CTGATCAAAG CGGCTGAAAG CTGTCAGAAG CCAGCCAGCC TCAGCACCTG ACTACTCCTT AATGCAGCTT TGCCTTTGAT 001920 001921 GTACAGGCAG TCCAACCGGG GTTCTATTTA TGTAAAAAAA AATAATCAGG ATTGTAATAG AACAGGAGAA AGTGTCATTT 002000 002001 TCTATTTTGA TTCCAGTTTT GCAGTCTGAC ACCTATAGGA AATGTGGACT AATTCTGTCC AGAGTATGGT GTGTGTGTGT 002080 002081 GTGTGTGTGT GTGTGTGTGT GTGTGTAACT CAATAAAATA AAATATCTTT GAAACTTCAT CAAATACATT TGGCAGTGAG 002160 002161 CAGAAGTTAG ATTGCTGGTA GAAAGAAATT ATCCTTCTTG GAAAGTAAAA AAAAAATGCT TAAGTAAAAT TGCAGCAGTT 002240 002241 TTGACATGTG TATTTTATGT TTCAGAAATT CTACAGGTTA TAGGTTTATA AATGGAGAAC TGGTCTTGGA TTTAAATGAA 002320 002321 TTGGCATCGT ATCTCAGACT TCTAGCTTTC TACCCATGTG AATTTAGGTG CGTACTAATC ACATATGTGT TTTAAGTTTA 002400 002401 TCACTGGCTA TATACATGGT TACTTTTGTA TATGCCTGTG CATTGAATGA AAATACCTGG CATGTGGTTG TTATAAGCAA 002480 002481 TAGACAGTTT TTGGCCAGAG AGCCAGGCAG ACAAGTGTTA ATATCACTTA AGCCCTCTGT GTCTCAAGTT CAAAATTTCT 002560 002561 AAAATGAGTG AATATAATAT TTGTTTGAAT TAAAGTATAC AAAGCATGTA TCTCAGTGTC TAAGACATTG TAAGACACCA 002640 002641 ATAAATGTCC AGTATTTCAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT068790_smProtein_92:337 |
Length | 82 |
Molecular weight | 8958.1417 |
Aromaticity | 0.0617283950617 |
Instability index | 49.9469135802 |
Isoelectric point | 6.05389404297 |
Runs | 9 |
Runs residual | 0.03106859619 |
Runs probability | 0.0204125694322 |
Amino acid sequence | MCPTSFRNVGQTSYLESEGEELPRATGPQEKPRDSCPSAALSMCCSHQKALEGDLHQKCI AVVWAQWITPVIPALWEAKRS |
Secondary structure | LLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLHHHHHH HHHHHHHHLLLLHHHHHHLLL |
PRMN | - |
PiMo | - |