NONHSAT069732

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT069732

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2307 nt

Genomic location

chr2-:27422455..27425917

Exon number

3

Exons

27422455..27423447,27423866..27424942,27425681..27425917

Genome context

Sequence
000001 GTCACATAGG AGTGAGGACT TGGTGGGAGG AAGCTGGGGC GTGATGTAAT ATGCCTTTTG TTTCCAGAGA GACAGAGGTG 000080
000081 GTAGTTTGGC TGGGCAGGGA GCCTTGCTTT ACCCCATTGC TTGTGTTAAC TCACACCTTC TTGTTTCCTC TCCTGTCCTT 000160
000161 TTCCCCCAGC CTTTGGCTAT GGGCTGCTTT GTCTAGGAAT GGCCTATATT TCCTCCCAGA TGGGACCTGT GCTGCAGGCA 000240
000241 GCAATCAGCA TCTTTGGCAT GGTTGGGGGA CCGCTGCTGG GACTCTTCTG CCTTGGAATG TTCTTTCCAT GTGCTAACCC 000320
000321 TCCTGTGAGT GATGCATCTG GATCCACAGT CATGTGTAGC AGGATGGACC TGGGGGTTGG CAGGGCTGTC ACCAGGAGAG 000400
000401 CTGAGGACTG CCGTGAGGGC TGGCAGGACT GGCCTTGTGA CAGGCCTGCA CTGTGTCTCG GCAGGGTGCT GTTGTGGGCC 000480
000481 TGTTGGCTGG GCTCGTCATG GCCTTCTGGA TTGGCATCGG GAGCATCGTG ACCAGCATGG GCTCCAGCAT GCCACCCTCT 000560
000561 CCCTCTAATG GGTCCAGCTT CTCCCTGCCC ACCAATCTAA CCGTTGCCAC TGTGACCACA CTGATGCCCT TGACTACCTT 000640
000641 CTCCAAGTAA GGCAGGGCTT GCTATCTTCT TGTTTTCTCA AAGCCCTCCT TTGAGGGCTT TCACAGGGGT CTTGCTAAGG 000720
000721 GATGGGCCAC CAGAGGCCCC AGGGAAATGT TGGGTATTGG GTCCCAAGAC CCTGGGACCA TGCGGGCAAG TAGAGATTGG 000800
000801 TGCCCAAGGA ATGCCCTGCC AACGAATTGC TAATTGTTCT CACCTCTGCT CTTCCCAGGC CCACAGGGCT GCAGCGGTTC 000880
000881 TATTCCTTGT CTTACTTATG GTACAGTGCT CACAACTCCA CCACAGTGAT TGTGGTGGGC CTGATTGTCA GTCTACTCAC 000960
000961 TGGTAAGGGT GTGGGATTGC GGTGCAGATG AGCACCGAGG GGTTAACAGA GGGCCCTAAG GGACTCTAGG GAGAAAGGCT 001040
001041 CCTGCCCTCT GAGCTCTTGG GTGTCCGTAG CTGTCAGGCT TTTCTGCTGG GATGTAGGAG GTGGGTGGGG GCTGGGGTCT 001120
001121 CTGGGGGCCA AGGGAGGACA TGGGGCCCGC TGCTGTGGAT GGTTCCACCC AGAGACTCAG AAGCACATTT CCATTCAGGG 001200
001201 AGAATGCGAG GCCGGTCCCT GAACCCTGCA ACCATTTACC CAGTGTTGCC AAAGCTCCTG TCCCTCCTTC CGTTGTCCTG 001280
001281 TCAGAAGCGG CTCCACTGCA GGAGCTACGG CCAGGACCAC CTCGACACTG GCCTGTTTCC TGAGAAGCCG AGGAATGGTG 001360
001361 TGCTGGGGGA CAGCAGAGAC AAGGAGGCCA TGGCCCTGGA TGGCACAGCC TATCAGGGGA GCAGCTCCAC CTGCATCCTC 001440
001441 CAGGAGACCT CCCTGTGATG TTGACTCAGG ACCCCGCCTC TGTCCTCACT GTGCCAGGCC ATAGCCAGAG GCCACCCTGT 001520
001521 AGTACAGGGA TGAGTCTTGG TGTGTTCTGC AGGGACAGGC CTGGATGATC TAGCTCATAC CAAAGGACCT TGTTCTGAGA 001600
001601 GGTTCTTGCC TGCAGGAGAA GCTGTCACAT CTCAAGCATG TGAGGCACCG TTTTTCTCGT CGCTTGCCAA TCTGTTTTTT 001680
001681 AAAGGATCAG GCTCGTAGGG AGCAGGATCA TGCCAGAAAT AGGGATGGAA GTGCATCCTC TGGGAAAAAG ATAATGGCTT 001760
001761 CTGATTCAAC ATAGCCATAG TCCTTTGAAG TAAGTGGCTA GAAACAGCAC TCTGGTTATA ATTGCCCCAG GGCCTGATTC 001840
001841 AGGACTGACT CTCCACCATA AAACTGGAAG CTGCTTCCCC TGTAGTCCCC ATTTCAGTAC CAGTTCTGCC AGCCACAGTG 001920
001921 AGCCCCTATT ATTACTTTCA GATTGTCTGT GACACTCAAG CCCCTCTCAT TTTTATCTGT CTACCTCCAT TCTGAAGAGG 002000
002001 GAGGTTTTGG TGTCCCTGGT CCTCTGGGAA TAGAAGATCC ATTTGTCTTT GTGTAGAGCA AGCACGTTTT CCACCTCACT 002080
002081 GTCTCCATCC TCCACCTCTG AGATGGACAC TTAAGAGACG GGGCAAATGT GGATCCAAGA AACCAGGGCC ATGACCGGGT 002160
002161 CCACTGTGGA GCAGCCATCT ATCTACCTGA CTCCTGAGCC AGGCTGCCGT GGTGTCATTT CTGTCATCCG TGCTCTGTTT 002240
002241 CCTTTTGGAG TTTCTTCTCC ACATTATCTT TGTTCCTGGG GAATAAAAAC TACCATTGGA CCTAGAA
[back to top]

Predicted Small Protein

Name NONHSAT069732_smProtein_50:316
Length 89
Molecular weight 9834.3617
Aromaticity 0.147727272727
Instability index 46.3261363636
Isoelectric point 6.22357177734
Runs 14
Runs residual 0.0277272727273
Runs probability 0.0687536275772
Amino acid sequence MPFVSRETEVVVWLGREPCFTPLLVLTHTFLFPLLSFSPSLWLWAALSRNGLYFLPDGTC
AAGSNQHLWHGWGTAAGTLLPWNVLSMC
Secondary structure LLLLLLLEEEEEELLLLLLLLLLEEEHHHHHLLLLLLLHHHHHHHHHHHLLEEELLLLLL
LLLLLLLLLLLHHHHHLLLLLHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooo
oooooooooooooooooooooooooooo