NONHSAT069894
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069894 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2186 nt |
Genomic location |
chr2+:30423029..30428801 |
Exon number |
3 |
Exons |
30423029..30423485,30426307..30426537,30427304..30428801 |
Genome context |
|
Sequence |
000001 CACTATCATG GAGGGAGGAT GGGTTTGTAG AGTGTCTTAG GATCAAAGCC TGACACTATG TGTCATTGTG TGTCACTGAG 000080
000081 CCCCTCAATA TATCCACTGG GGTTTGATCG AAAAGGAAGA GCCACTATGA GTGATATAGA ATGAAGACAT TTGGGGGAAT 000160 000161 TAGACCTTAC ACAATTGTGG GAGCTGATTC AACAGTCTGC CCAATGCAGC TGTTGCCATG TCCAGTGTTG GTCCTAAGTC 000240 000241 AGTAGAGCCA GCAGTTGGAA AGGAGAGATG AGTGTGAAGA GGGGGAGAGT AAGACTAGAT TAGAACCCAT GAAGACAAAC 000320 000321 TGGGACCCTG GAGGACAAAC TGGAACTCAC ATTTGTCTCA CTCTCTTTCA GTGATGCAAG TGACCTGCAG GATTCACTGG 000400 000401 TGCCCCACAG AGCTGCACAA GCTGGCCCAG GATTTGGAGA AGCAGAAGAT TCGACAACTT GGAGGTCCTT GGGCTAAATG 000480 000481 GAGGAGAAGG GTATACAGAG CTGAGAGCCA AGGAAGCCGA TGAGGAATTG CACTTGGGTG TGGAGAACAA AACTACGTGG 000560 000561 CCATTGATTG ACTCAGGAGC TCTGCTGGAG GTGCCCTTGG CTCCCTGCAT CTTAATCCTG GCCTGAGAAT GGTCAGTCTA 000640 000641 CTTGAGGGCC AGTAATACGA TCTTAAACCT TCATGACTTA CGCCTCAGAG ACCTAGTGCC GCACTTGACC CACAAGAGGA 000720 000721 CTCTTGAACA CCAGCTGTAA CATCCACCCC TTTTGCTTCT GTTGCCTCTT CTGGGAGCCC TGACGGGAAA ACCCAGTGAG 000800 000801 GTTGAGGATA CAGGGGTTTG TGGGAGACCT CCGTCTCTGG AACGAATCCC CCACTCCTCC ATCATGCCCA CCACACTGGC 000880 000881 TGCTTGATTT CTCTGCCACA CTCTAGCTTT TCTCTCTGAA AAACAACTTG CCAGTAACAC AGCAAGAAGG CTCAGGGCTC 000960 000961 TGAACTATTG TGTGCATCCC AGGTGGACTC AGTCCCCAGA TGGAAGAAGG ACAAGTCTCC ATCTCAGAGA CAGGGAGTGG 001040 001041 GAAGGTAACT GGAATTTTAC CTGTGCAAAG TGCCCTACAT CCAGGTGATA TTTCATCCTG CTCTGTTCCT TCGTAAAGGT 001120 001121 CTCCAGCGAG CAGAAGGGTT CCATGAGCCT TACTCCTCTG GTCCCAGGCC TTGCCAGGCA CATGTTGCTT TTCCCTGGGA 001200 001201 GTAGGGCTGG GCACTCCTGC CTCCCCATGC CCATCAGCCA TGGGGTTCCC TTTAAAGGCT CTGGATTGAG CACAGTCACC 001280 001281 TCTAATGGGA CCATGGAGGA CCAGCCCAGC AACCTAGAGC TGCTTCCCAG GCTGCCTGGG AATCATTTCA TTTTCTATTT 001360 001361 GCAGAATCAC AGATGTTGAC TTTTGATCTC TTCCTCTCTC CCTTGGGGGC CTCAAATCAG TGATGACAGC TATTTCATTT 001440 001441 CTTTTTAATT TTTTTTCTTT TCCCTATAAA GAGAAAAGGT CAGAAAGGGC TCAGAAAGGT TTTGAAAATA TTGGAAGAGC 001520 001521 TACATACTGG CTACTGGAAT GCAAAAGAAA AGCTCTAGCC CTCTCTATGG AAAGCTCATG GCAATGACCA GGCAGAGGCT 001600 001601 GGGGTGGGCA CTCTTTAAGG CAGTAATGTT AACCTTTAGT GTGTCTGTAA ATCATTCAGG AGTCTTGTTA TTAATACAAT 001680 001681 GCAAATTCAG ATTCAATAGG TCTAATGCAC TCCCAGGCAA GGTCCATGCT GCCAGCCCAG AACCATGCTT AGAGGAACAG 001760 001761 GTGCTGAGTT TCTTCCTCAC CTCCACCTTG CCCCAGTCCT GAATCCTGCA ATCTGTAAAT GCTCCCTGCT ATCTTCATGC 001840 001841 AGTTGAGTCT TAACAGGCAA GAAGCCAGCC AAGCGAGAAT CTCTCAGCAG ACACTTTAAT CAAATTAAAA CCCACATTTA 001920 001921 GATTTTTATC ACTTTTGATC ATTTAAACAG AAGAACTTTC AGATATATAT AGATTTCCAA AGAAGGGATC ACAAGAGGAC 002000 002001 ACTCAGGTGA GGGGTGGGGA GTTGGTGGCA GTGTTGGGGG GGCTTTCTTC TCTCACCCCA TTCTATCCCC TTTGACTTAT 002080 002081 TCATTTCTTT TAAATAGCAT TTGGCTCAAC TATTATGATC TTATGCTGAA CCTTTTGCCA TCCCATGAAT GGGCAAGCCT 002160 002161 CTGTATACCC AGTGAAAATT ACCTTT |
Predicted Small Protein
Name | NONHSAT069894_smProtein_1538:1801 |
Length | 88 |
Molecular weight | 9701.3689 |
Aromaticity | 0.0919540229885 |
Instability index | 47.8793103448 |
Isoelectric point | 10.1450805664 |
Runs | 10 |
Runs residual | 0.0233169129721 |
Runs probability | 0.0892510157216 |
Amino acid sequence | MQKKSSSPLYGKLMAMTRQRLGWALFKAVMLTFSVSVNHSGVLLLIQCKFRFNRSNALPG KVHAASPEPCLEEQVLSFFLTSTLPQS |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHEEEEEEELLLLEEEEEEEEEEELLLLLLLL EEELLLLLLLHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooooooooooo |