NONHSAT070464
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070464 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2346 nt |
Genomic location |
chr2-:45875614..45877959 |
Exon number |
1 |
Exons |
45875614..45877959 |
Genome context |
|
Sequence |
000001 CCGCGTATCT CTCGGGGACC CTGCGGCCAA CACTGTCTTT TAGAGCCGGG GATGGGGGAG TGGAGGGGGC CCTGTTGCCC 000080
000081 TAGAGGCCTC GGGACCCTTC CCTTGCCCAC CCCCACTCGG GCCGCGGCGG GCAGGAGCAG TCTGCGGAGT TCTGGCCCAT 000160 000161 CTGTCACTCT GTCCCGGGAC GCTGTGATCC ACGGCGGTGG GGGAGGGGGA AGGGGGAGGG ACAAGCATGG CTCGGGTGAA 000240 000241 GTTTTAAACT CTGTTCTTCT CTCTTGCCTT TCTTTGGGGA CATTCTCCCC TTTGGGATCT GTCCTGGACT TCGCAGGCTG 000320 000321 CGAGAACTTG TTGACAAGTG AAAGCTCGGT AGAGCCCCGG CTTGGTTTGT GGTCTGCTTA TTTTTTGCAA AGTGACTGTT 000400 000401 CCTGTTTGCG CTGGTCCTTA TCGGTGCCCC TTTGGGGGAC TTCGGCACTG ATCAGCGCGC TGACAGCCGC CGTCCGGGCT 000480 000481 GCGGGAAAAT GGGGCGCGCC CTCCGGGGGG CGAGTGGCTG TGTCCTTGCT AATTTCCTCC GTAACCTTTA AACTCTCGCT 000560 000561 GGAAGCTACC GCCGCGGCTG GTCACGTGAG GAGAGCCCTG GGCTGCTGGG GAAAAATTTC CTCGGCTGGG AGCCGGGACC 000640 000641 GGGCCGGCGG CCGGCGAGGG ACTGCCCCGC GCCCGAGACT GGGAACCTGG GAGGGCAGGG CCGGAGCGCT GGGCCCCGGG 000720 000721 GCGCGGCCCA GCTGGGACAC CCGCGAAGAC GGCGGCGGTG AAGAGGTCGG CTCCGCTGCC GGGGAGCTGG GGATTATGCA 000800 000801 AATGGGGAAA GAAAACCTCC GCCCTCGCCC TTCTGCCAAG TCAAGTCTGG GAATTTGTAG GTATTGTGGT AAGCTGAGTG 000880 000881 TTCATCTGGC GGGTCTGGTT AGTGTAAACC AAAATTTAAA ACGCGCCTCC CGATCACTTT TTCCTCAGTG GGTAAAGGTT 000960 000961 ATCATTGCCT GCGGCTTAAA AGCCTAAAAA GGCTTAAAGG CGAGGAAGGA GGCAGTCCCC TGGAAAAACA GGATATCAAG 001040 001041 TGCAGCAAAC ACGTCCCAAA AATGATCCGA AAAGTTCTAG GGCCATCTCC TAAGAACAGG CAAAGCCTTT GCCTGCAACC 001120 001121 GCTCTGGAGC TTCCTAATAC AGTAATTTCT CGCAGCCTGC CCTGTTGAAC AGGGCAGCTG GGTAGAGATG GTGCTAAGAT 001200 001201 TCAGTCTTCC GTATGATCTA GGTAGCTCCG ATGTAAAAAG CCAGGATTTC AATGGTTGTC TTACCCTGTC ACTCCCCCAG 001280 001281 CTGGAGATAC GATATCTTAA AATATGTCCG TTTGACAAAG CACAAGCAGG GGTATCTCAT TGCTGTTTAA TTTTTATTTC 001360 001361 TTTGATTATT ACTTTTTTCC CTTTTGCTTC TTCCTTCCAC TCTGCTATTC TCATGAAGCC TCTTTCCCCC TTTCCAGGGC 001440 001441 ATGTGATGGA AGGCAGTGGC AAATATGGCT TGATCTTCTG AAAATGCATT TGGGAAGcag agccagcacc aaagtgagat 001520 001521 gagtgagata cttttcagag gcaaaatgta aagggtacca ataaacgtaa tcaagataaa gatttaatac aattttttaa 001600 001601 aaataaaaat gtgagaatcc agaatggaca caatatccac attttaaata attttaaata ttgcactaaa atatttatac 001680 001681 tactgagttt attggcacct gttaaatttt gtacctgagc cgagtgcgtc actcatctca ccctagtcct gatcctgTTG 001760 001761 GGAAGTCTGG AAAGTCAAGG ATTTCATGGA GTTAGGGATC CTTGACTAAT TGGTGCTTCA TATGTTCTCA TTACTTGCTT 001840 001841 TGGGTAAGTC TTGTACAGGC AGGAGCCACC ATGCCCAGCC CCCAAATATA TTAAATAGGG TCTGTTACCA TCTCAGTGAC 001920 001921 TGTCTTAAAA CAACCTACAA ACTTCCAGCA CCATTTCCTA GCATGCTGGC TCAGCAGACT GTTACTCCGT GTAAATCACC 002000 002001 AGACTGCAAT TCTCAAGGGC GACCAATGCT TGTCTCCTTT CCATTACAGC AACTCTTTTG GAGCAAGGGT AATAAAAGAC 002080 002081 TTTGTCAAAC AAAATACATG TTTTGTATTG GATTAATGTT TACATAAAAA GGGAGAATGC TGGTAGTCTG CATGCAAACA 002160 002161 CTGCTAGTTT CCTGCCCTTA TTACCTCCTT ATTTCTAAAT AAATCTCTCG CCTTCCTACT CTCAAACTTG GCCAAATGAA 002240 002241 AAGTTGAATT CCCCAGGGAC ATCATGGAGA TGCCAGGTCC AAAATAACCC CCTGCTCCAG GTTTCATGTG AAAAGAAAAT 002320 002321 CCCAAGGAGG GGGCTTAGAC GGTAAA |
Predicted Small Protein
Name | NONHSAT070464_smProtein_1187:1480 |
Length | 98 |
Molecular weight | 10750.5972 |
Aromaticity | 0.134020618557 |
Instability index | 46.5979381443 |
Isoelectric point | 7.69329833984 |
Runs | 16 |
Runs residual | 0.0334096983582 |
Runs probability | 0.0464030206678 |
Amino acid sequence | MVLRFSLPYDLGSSDVKSQDFNGCLTLSLPQLEIRYLKICPFDKAQAGVSHCCLIFISLI ITFFPFASSFHSAILMKPLSPFPGHVMEGSGKYGLIF |
Secondary structure | LEEEEEELLLLLLLLLLLLLLLLEEELLLLHHHHHHHEELLLLLLLLLLLHHHHHHHHHH HHHLLLLLLHHHHHHLLLLLLLLLLEEELLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTT TTTTTTTTTTTTooooooooooooooooooooooooo |