NONHSAT070704
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT070704 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3073 nt |
Genomic location |
chr2-:54092007..54098097 |
Exon number |
3 |
Exons |
54092007..54093360,54093884..54094017,54096513..54098097 |
Genome context |
|
Sequence |
000001 atctattcta agaaaataTA CTGCAggccg ggcacagagg cttacgcctg taatcccagc actttgggag gccaaggcag 000080
000081 gaggattgct tgagcccacg agttggagat cagcctgggc aacaaaaaaa aaagtgagac ctgtgtctac aaaaaataaa 000160 000161 aaaatAAAAA TGGAGTATAT TGAAAATATA TACTGTAATA TGAAAAGTTA CACAAATTAA GAATATAGCA TAGTACTGAG 000240 000241 AATATGAAAG CAATCTAGTC AGTATTTATG AAAATAAACT TTGGTggctg ggtgcggtag ctcatgcctg taatcgcagc 000320 000321 actttaggag gctgacgtgg gcggatcacg aggtcagaag atcaagacca tcctggctaa cacggtgaaa ccccatctct 000400 000401 actaaaaata caaaaaaaaa aaaattagcc atggtgtcag gtgcctgtag tcccagctac ttgggaggat gaggcaggag 000480 000481 aatggcatga acccaagagg caaagcttgc agtgagccga gactgcgcca ctgcactcca gcctgggtga cagagcgaga 000560 000561 ctccatctca aaaaaaaaaa aaaaaaacga aaagaaaaGA AATTGTGGCA TATAAGCTTT ATAGGAAATA GTGCAACCAG 000640 000641 TAAAACATTT TATGATGTAT TTCATATGCT AGTGTAATGA ACGCAGCAAA GAACATGTTA CGTACTCGAC AGACGATGAT 000720 000721 AAAATTATGA GAAACCTTTT GAAGGAATAC AACAGAGCAA AACATCTGTT TTTTAAAATT ATCATTGTGT ATTATGAATA 000800 000801 TTAAACAAAT GTTTGTGATT TATATGTGAA ACAATGTCTT TTTACCGCTT TTTTGTTTTC CCAAAAGTTG AGTTACCATT 000880 000881 CCAATTTGAA ATGGACTGTG TACACGCTTC ATTTAGTACT TTTGTAAACT GTGTTTGTGA TCTGACAGCA GCCTGTGAAA 000960 000961 TTCATAAGAA TCACATAGGA TGTAAGTCTC CATGATGTAT GCCAATTACA GAAATTAGGT TGGTCTGTGT CTTTGTTACT 001040 001041 AACAAAAATA GCTATAGCAG TGGCCTTCAG AGATGTAGAG TCTGGAAAAA CTTGATCTTA ATGTCAGGTT CTGGCACTGC 001120 001121 TTTTACAGTT ATAGCCCTGA TGAGAGCTAT CAGTAGGGAA AATAATTTAT GGAGAAATTT AATTTTGCTA AAAGAGATAA 001200 001201 AAGTTTATGC TCATAACCCT AATgtagttt ttatccatta tgaggccaca aactctttga gaatctgctg aaatctctat 001280 001281 taagaaactg ccaaagagca tacacaaaat ttgcatgcaa tttcagggAA GGTCTTCACC CCAGTTCCCA CACTACCCCC 001360 001361 TATCCTCCAT TATTCCCTCA GACTTAGAAT GTCAGTCCTA ATAGAAATTA TTATATCTAC AGGTTCGAGA AATGGCTGCT 001440 001441 ACTACCTTAA GCGGTCTGCT ACAGTGTAAC TTTCTTACCA TGGACAGTCC TATGCAGATT CATTTTGAGC AACTTTGCAA 001520 001521 AACAAAACTA CCTAAGAAAA GAAAGCGAGA CCCTGGTTCT GTAGGAGATA CCATTCCTTC TGCAGAGTTG GTCAAACGCC 001600 001601 ATGCTGGGGT GCTAGGACTT GGTGCATGTG TTCTTTCTAG TCCTTACGAT GTTCCCACCT GGATGCCCCA GCTCCTCATG 001680 001681 AATCTCAGTG CACATCTAAA TGATCCTCAG CCTATTGAGA TGACTGTAAA AAAAACCTTA TCCAATTTCC GAAGGACTCA 001760 001761 CCATGACAAC TGGCAGGAAC ATAAACAGCA ATTCACTGAT GACCAACTGC TTGTTCTCAC CGATCTTCTT GTGTCACCAT 001840 001841 GCTATTATGC ATAGAAAGGT AAGTCAGCAA AGTTCTGAAT TTACATTGGT TTGGTGACTG AGAACTAGAT ATTTATTGTT 001920 001921 TTTTTTCTTT TTGCTGACAT TCTTAGATGT CAGTGTTTAG ATAAAGTTGG ATGGCGGGGA TTGTTTGTTT TTAAACATGG 002000 002001 CTTTTGCTAC GGCCATTGGA AATGAGAATT TTGCTGTGCC TCCTTGCTTT AGGTTTAAAG CAGAGAAAAT GTGTGACTGC 002080 002081 TTTTGGACCT TTGTAGATGA GTGGTGTCAG CCTGGGAATA GTTAGATAAA GGAAAATACA TCTTATTCTT GGTTGCCTCC 002160 002161 TGGGTGGGGC TGGGACATTT TGTGTGGCCC TGAGGACTCT GGGTTCTAAA AGTTGTGAGA ACTTGATCTG GATTCTTACA 002240 002241 CCCATTCTGT TAAAGAGGGA GTACCCAGAA GCCTTTCTAC TGGAATAGGA AGAATAAAAA TTTCATTTAT TAGGCTTTTA 002320 002321 GAGTTGGATG TCTTGTTACC TAATTGAAAT TTTTTCCTCC CTGATACAGA TGACTAGTCC TCACTTCAGG CTCTTTTCAT 002400 002401 CAAAAATTCC ACACCCTCAG GTACCATCTG TGGTGGCTCT CTGCAAGTTT TAAAACTGCC TCTGCTGAGC TCTCATCATT 002480 002481 TTGGTGGTTT CTGTGTTAGA TCTCGTTAGT CTGCATTCCA CAGCTTCTCA GTTGCCATTT GATTTCCCAA CTTGTCCGGA 002560 002561 AGTGTTTCCA GAATACTGAT CACTTTTTTT TTTTGAGGCA TCTGACAAAG TCACAAAGTC TCAGACTAGA AATAATTACC 002640 002641 CAGTATGATC ATGGCATCCA AGACCAGAGT CTCAGAACTC ATTAAGAAAC AGTTTACTTG GAATGGAGAA TACCCATCTG 002720 002721 TAATACAGGT CCTGTCATTT CATTCATCTC AAATTATTTT GAATTCTTCC CAAATGGCTG CTGGATTTAG GTGGTAATAG 002800 002801 GGGCTGTGGG CCATAAATCT GAAGCCTTGA GAACCTTGGG TCTGGAGAGC CATGAAGAGG GAAGGAAAAG AGGGCAAGTC 002880 002881 CTGAACCTAA CCAATGACCT GATGGATTGC TCGACCAAGA CACAGAAGTG AAGTCTGTGT CTGTGCACTT CCCACAGACT 002960 002961 GGAGTTTTTG GTGCTGAATA GAGCCAGTTG CTAAAAAATT GGGGGTTTGG TGAAGAAATC TGATTGTTGT GTGTATTCAA 003040 003041 TGTGTGATTT TAAAAATAAA CAGCAACAAC AAT |
Predicted Small Protein
Name | NONHSAT070704_smProtein_998:1270 |
Length | 91 |
Molecular weight | 10355.1459 |
Aromaticity | 0.0888888888889 |
Instability index | 45.8733333333 |
Isoelectric point | 9.93817138672 |
Runs | 14 |
Runs residual | 0.01569664903 |
Runs probability | 0.0483824160295 |
Amino acid sequence | MPITEIRLVCVFVTNKNSYSSGLQRCRVWKNLILMSGSGTAFTVIALMRAISRENNLWRN LILLKEIKVYAHNPNVVFIHYEATNSLRIC |
Secondary structure | LLLEEEEEEEEEEELLLLLLLLLLHHHHHHHHEEELLLLHHHHHHHHHHHHHHHLHHHHH HHHHHHLLEEELLLLEEEEEEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo oooooooooooooooooooooooooooooo |