NONHSAT072396
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072396 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3030 nt |
Genomic location |
chr2-:95421060..95427994 |
Exon number |
5 |
Exons |
95421060..95421374,95421702..95421891,95425026..95426010,95426369..95426572,95426659..95427994 |
Genome context |
|
Sequence |
000001 CCACTCCACC TGATGCCCCC ACAGCCCTCA CAGGGTCTGT CCTCCCAGCA TGCACCTGCC TCTCCCTGCA CCCCAGATGT 000080
000081 CCACCCTGCC TGTTCCCTGA CTTCCTCCAT CCTGTCCAGC AGGATGGGCT GGGAAGTGGG AAAGCCTGTG TGCACATTTC 000160 000161 GTGGCAAGTA GGAGTGACAC ACCATCCCTG GGAGGCACCT GCCAAACCCA ACCCCAGAAG TCTCCCTGAG GTGGTTTTAC 000240 000241 CAAACCCATA ACCCACAACT GTGATTGTGG TTTGGGGGTC AGCACCCGCT AGTGCCAGGG CACTACTGGG AAGCTGGGAC 000320 000321 CTGACCAATG CCCATGGTGT CTGTGGCCTG AGGACAGGGT GTCTTGGGGC CATGAGGACA GGCCACCAAT GGCCATTGGG 000400 000401 TCATAGGGCC TGAGCCCCAG TGTTTTTCCT TCCCTGGCTG CTTCTGGTTC AGTCCCATTC AGGGCCCTAG AGCCCAAGAT 000480 000481 GCAGCATCCA AGGTTCCCTC CAGAAATCCT GGTGGCTCGA CTTATTTTGT CATGTTTCAT CTGATAACAA AAATATCATA 000560 000561 TCAGCTGCAC AGAAAAATGG CTCAAAGTGC TTAATGACTA GAAGAAATCG AGGAGCAGCA AGAAGGTAAT GTGGAGAGGG 000640 000641 GAGGACCTCC ATGACCGGTG TCTGCAGAGC CAGGGGTACA GGCACCCAGT GCAGTGACCT GGCACCACCT GCCTCTCAGA 000720 000721 GGGTGGGTAG CACACTGTCC TTACCTGGGG GACAGCAGGC CTGGCCACCG GCTTTTCTCC CTGTCCCTGC AAGCATCACA 000800 000801 TTGCTGGAAG AGAATTTCAT GCCAGAGCTT GGACCGTCCC TAGCTTGGGA GGTACGGGTT GTCTCTTGGT GACCTAAATG 000880 000881 AAAAAATAGG TCCAGAACAG AGTTCCTGAT GCTGGGCACT CATCCACTCT TTGAATCATG GGAGGGGAGG CCTAGTCCTA 000960 000961 GGTAAACCTA ACCTCTTTGA GGAACCACAG TGCCCAAGGC TGGAAACCTC CAGAATCCTC CGGCCCCCGA TCCTCCCCAG 001040 001041 GGACCCCTGT GGCCTGTCTC ACCAGAGCAT TCTTCCATCT GTAGATGTTT CAGCTGCTGT ACAAGGGAGT CCCATTTCAG 001120 001121 GTGTGGGGCT GGGCATGGTC ACTCCTGCTG GATGTCTGGA AGGTGAAAAC CAAGGACCTA GGGAAATACC AGGTACAGCC 001200 001201 TTTCCACCCT CATCCAGAGC AGGACAAACA GGCCAGGTGG TATCAGGAGC CCAGGTCTCC AGCTGGAGGG AATGTCAACC 001280 001281 CTGCAGTGGG AGCCCATCAC GCATCCTAGG CACAGATGCT AATGTAGGCA CCGCGGAAGC ACTGCTGACT GTTTGGTGGT 001360 001361 TGCTGTTGGG GCAGTGAGCC TTTTGTCCAT TCTGAGATTG GGCTGGTTTC TCCTCTTGGC CCTGCCCTAC AGACCATAAA 001440 001441 GGAAAACAGC AAGAGGTCCG CAGCAAACAT CTACAGATGG CCCTGGACAT CAGCCACATT CTGAGAAACA TGTCATGTTC 001520 001521 TGGGAGGGCT AAGGCATCAA GCTCACCCTG CAGGAATCCC AGTGAATATA TTGCCACCAT CTTGGAGCTC AGTGCCCTCT 001600 001601 TAGTGTAATG GCACCAGCAG ATCTGCCTGT GCACGGACTT CCTGTACTAC CTCACTCCTG AGGGGAGATG CTTCTGCAGG 001680 001681 GCCTATGACC TGGTGCACAA CTTTAGACAC CATCATCCTG GAGCAGCACC TCACCCTCAC TTGCCGGGGT GTTGATGACT 001760 001761 TCCTCAAGGC TAAGGCCACA TTCAAGATTT TGGACTTCAG TGATGCATTT TTGCTGAGCA AGGTGGGCTT CTCCGGGATT 001840 001841 TTAGTTCAGG AGGTAGAATG CAGCTTGAGA TCAAGTGTCT GATCAAATAA CTTGAACTTG ATCTGGAGAG CTCTGGGGAG 001920 001921 CCATAGAAGT TGTTGGATAA AGGAGGGACA GTCGTATATG TTTTAGAGAT GACTGTGGAA GGCTGCCTGG AAGGAGTGAA 002000 002001 CAAGAGCCAG GAGACCAGGG AGGGAGCTTG TGGGGCAGGT CTGGAGATGA CAAGGGAGGG ATCCTGCTTT GATGAAAGGT 002080 002081 CTTCAGGGAA TGTCTCAGGT TACACTCAGG TGTCCTCAGA GCTAGTGTGT TCAGGGGTCT TGCCTCCAGG ATGAAAATGA 002160 002161 GAAGGAGTTG TCAGACAAGA ACATATAAAT GAAGGCTGGC ATCTTCGTGA GTGCCAATCG TTGTCCTGGT GTGGACTACT 002240 002241 GTGGGAATAG GGGTCTCTCC ATCCAGGGAC ATGGTGGATG GACCCTACAT CACTCCATTC TGCCCTTCCT TTCCCTCCCA 002320 002321 TTCTGAGGGC CTCAGTGCAA GGGCGCTGTC CAACCTCTGG TGCTGAAGCA GCCGAGAGAC CCAAGCCTGC CACTCAGGAT 002400 002401 ATGACAGCAC AGCCAGTGGC CTCTACTGGA TCCTGTACAA CCTCAGAAGA CACCTAGACA CTGGGAGTGC TGCCACCACG 002480 002481 TGGTGCAAGA GTTCTGAGGG ACCGCAATTC TGAAGACATT GAATGCTGCT TCCTGCTCCC TCCATGGACC TGCACAGAAT 002560 002561 TGTCCCATGT TTCTGTTTGT TTGGGCACCA CTGAGGAAGG AAGCATGAAG GACGCAGAGG TCAGGCCATT CTATTGCCCT 002640 002641 CCTGCTGCTG GGTCTTTAAT CCTGAGATGG CTTCAGGGGC TGGTCCTtct ccatggcccc ctccacatat ctcagccatt 002720 002721 ttgcaaaccc tggtcagaat gaaacattcc ttgggaactc gggccatgag aagcatcctt cctgaccacc tgactgcgga 002800 002801 aacatcctta tcgcatcctc ccgggcgaag gcccaacagc ctgactgcag gaacatcctt gccatatcct gccgggcagc 002880 002881 aagctctacc gcccagaccc ctccttccca gtcccatgat cgccccagcc tgtgagcggc agttggtgat ggcactaagc 002960 002961 tgatttcctc ctctgcaggg ttttgctagt aataaaggtg ttgctgttga agccaccaac catgtctctc |
Predicted Small Protein
Name | NONHSAT072396_smProtein_2666:2962 |
Length | 99 |
Molecular weight | 10358.0235 |
Aromaticity | 0.0204081632653 |
Instability index | 76.3418367347 |
Isoelectric point | 11.2736206055 |
Runs | 9 |
Runs residual | 0.0472057982071 |
Runs probability | 0.0392156862745 |
Amino acid sequence | MASGAGPSPWPPPHISAILQTLVRMKHSLGTRAMRSILPDHLTAETSLSHPPGRRPNSLT AGTSLPYPAGQQALPPRPLLPSPMIAPACERQLVMALS |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHHHLLHHHHHHHLLLLLLEEELLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |