NONHSAT072509
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072509 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3115 nt |
Genomic location |
chr2-:96472800..96492729 |
Exon number |
3 |
Exons |
96472800..96473050,96479798..96479893,96489949..96492729 |
Genome context |
|
Sequence |
000001 GGGGCAAGAT AGCCAACTAG AAGCAGCTGC AATTCGAGGC TCCCACTGAG AAGAACTAAA ACAGTGTGCA AATCCTGCAC 000080
000081 CAGCAACTGA CATATCCAGG TTCTATGATC AGGACTGACT AGGTAGTTGG CATGGCCCAT AGAGAACAAG GAAAGATGGG 000160 000161 CTGGTGGATT GGCCCACCTG GGAGCCACAT GGGGCAAGGG GAGCCCTCAC CCTCAGCCAG CCAAGGGAGG CAGTGAGTGA 000240 000241 GCATGCTACC CAGCCTGGGA AACTGCTTTT TCCATGGATC TTTGCAATCC ACAGATCAGA AGATCCCACT CATGAGACCA 000320 000321 CACCACCAGG GCCTTGGGTG CCAACTACAG AGCCATGCAG ATTCTCAACA GCCACTCAGC TGGAGTCTGC CTAAAAAGTT 000400 000401 GGGGAGGGTT GTCATCATCA CTGTGGCTGC CTGCTGCCTA AACCCTCTGA GTTCCCTGGG GGAGGGGGAG CAGTCATCAC 000480 000481 TGTGGTTGCT GGCTGCCTAA GACAACTGAG CTTCCCAAGA GAGGGGCAGT CATCATCACT GCAGCTGCCT GCTGCCTGAG 000560 000561 GAAACTGAGC TCCCCAAGAA GGGACAGCAG CCATCACTGT GGCTGCTAGC TGCCTAAGAC ACTGAACTCC TGGGGAGGAA 000640 000641 GGGCGGCAGC CATTTCTACA GAGCCAGGCT GCTGTTTTTC CTTTGCTGAT GCCAGGGAGA CTGGACGGCT TGGTCCCAAG 000720 000721 AGGTATTCCC CACAGCGCAG CATACTGGCT GTGGCAGATC ATGGCCAGAC TGCCTCTTTA GGCTGACCCT CACCCATCCC 000800 000801 TCCTCACTGG GTGGGGCATC CCTGCAGGAA CTCCAGCAAC TCAAGCCAGG GAATTAGGGA GAGAACTCTG ATCTCTCTAA 000880 000881 GTCTGAGTCC CTAGCAGGAG GGGTGGCTGG CTGTTGTCTC CACAAACCAG AAGACTTATT CTTTCCCCCT GCTCACTCTG 000960 000961 AGGAATCCAG GCATCCCAGA CGAGTGGGAT TTCCCCCAGC ACAGCATACC CCCTTCACAA AGGGACAACT AAAGTGCTTC 001040 001041 ATTAAGCAAG TCCTGGATCC TGTGCCCCCC AACTGGGTGA GACACCCCAA TGGGTCACCA GACACCTTAT ACAAGAGCAT 001120 001121 TTCTACTGGC ATCAGGTGGG TGCCCCTCAA GGACAGAGAT CCCAGAGGAA GGAGTGGGGT CTCATCTTTG CTGTTCTCCA 001200 001201 GCACTCTCTG GTGACATCTT CAGGTGTGGG AGGGACCCAG ATAAGTAGGG CTTGAAGTGA ATCCCCAGCA AACTGCAGCA 001280 001281 GCCCTACAGA AGAGGTGCCT GACTGTTCAA AGGAAAACAG AAAGCAACAA CAACATCAAC CAAAAAGTCC CCACGAAAAC 001360 001361 CTCATCTAAA GGTCAGCAGC CTCAAAGATC AAAATGAGAC AAACTCATGA AGATGAGAAA GGAATGAAAA ACCCCTCACA 001440 001441 ACTCAAAAGG CCAGAGTGGC TTGTTTACTC CAAATGATCA CAACACCTCT ACAGCAAGGG CACAGTGCTG GGAGGAGGTT 001520 001521 GAGATGGATG AATTGACAGA AGTAGGCTTC AGAAGGTGGG TAGTAGCAAA CTTCACTGAG CTAAAGGAGC ACGTTCTAAC 001600 001601 CCAACACATT GGAACGAATC CCAGAACTTA AAGATTGGTT CTCTAAAATA AGACAGACAA AAATAAAAAA GAATAAAACG 001680 001681 GAAGGAACAA AACCTCCAAT AAGTATGGGG TTATGTATAG AGGCCAATTC TACAAATCAC TGGCATCCCT GAAAGGGAGG 001760 001761 TGGAGAAATC AATGCATTGG GTTAGAACAT GCTCCTTTAG CTCTGTGAAA TTTGTTATTA CCCACCTTCT GAACCCTACT 001840 001841 TCTGTCAGCA AAGAAGCTAA GAACCATGTT AAAAGGTTAC AGAAGATGCT AACTAGAATA ACCAGTTTAG AGAGGAACAT 001920 001921 AAATGACCGG AGCCAACTAT AAAGCACATA AGGGGAACTT CGTGATGCAA ACACAAGTAT CAACAGCTGA ATTGATCAAG 002000 002001 CAGAAAAAAG AATATCAGAG CTTGAAGACT ATCTTGCCAA AATAAGGCAG GCAGACAAGA TTAGAGAAAA AAGAATGAAA 002080 002081 AGGAATGAAC AAAACCTCAA AGAACTGTGG AACTATGTAA AAGACCAAAC CTATGACTGC TTGGACTACC TGAAAGAGAC 002160 002161 AAGGAGAATG GAGCCACGTT GGGAAAACAC ACTTCAAGAT ATCATCCAGG AGAACTTCCC CAACCTAGCA AGACAGGCCA 002240 002241 ACATTCAAAT TCAGGAAATC CAGAGAACCC CAGTAAGATA CTCCACAAGA AAATCAACCC TCAAGACACA TAGTCATCAG 002320 002321 ATTCTCCAAG ATCAAAATGA AGGAAAAAAT GTTAAAGGCA GCCAGAGACA AGGGCAGGTC ACCTACAAGG GGAAGCCCGT 002400 002401 CAGACTAACC GTGGGCCTCT CAGCAGAAAC CCTACAAGCC AGAAGACAGT TGGGTCCAAT GGTCAACATT CTTAGAGAAA 002480 002481 AGAATTTCTA ACCTAGAATT TCATATCTGG CCAAACTAAC CTTCATAAGT GAAGGAGAAA TCCTTCTCAG ACAAGCAAAT 002560 002561 GCTGAGGGAA TTTATCACCA CCAGGCCTGC CTTGCAAGAC CTCCTGAAGG AAGCACTAAA GATGGAAAGG AATCAGAATG 002640 002641 ATGCTGGCCT CATAAAATGA GTTAGGGAGG ATTTCCTCTT TTTCTATTGA TTGGAATAGT TTCAGAAGGA ATGGTACCAG 002720 002721 TTCCTCCTTG TACCTCTGGT AGAATTCGGC TGTGAATCCA TCTGGTCCTG GACTCTTTTT GTTTCTCCAC AGACACTACC 002800 002801 CAAAGCAGTC CTTCACTACA GTGGCAGACA GACCTGAAAA TTTTCATCTG AAGCAGCAGA GTGAACTGCA GAGTCAGAGA 002880 002881 TAGAATCTCA CTATGTTGAC CAGGCTGGTC TTGAACTCTT GGCACCCAAG CGATCCTTTT GCCTGGAATC CCAAAGTGTC 002960 002961 AGATTTACTG AAGAATATTT CATTGTAATT ACTTTTTATA CTTTATAGGT CAAGAGCTCT GTTTTAAAGA CAAAATTTAT 003040 003041 TGAATATACT TTTTCAAACA AAGTTTCATG TTCTAATCAT TGTCTGATTT CAGCATTAAA TGAAACACAG TAAAG |
Predicted Small Protein
Name | NONHSAT072509_smProtein_242:499 |
Length | 86 |
Molecular weight | 9178.5611 |
Aromaticity | 0.0470588235294 |
Instability index | 59.8788235294 |
Isoelectric point | 7.73883056641 |
Runs | 10 |
Runs residual | 0.0188948306595 |
Runs probability | 0.036777954425 |
Amino acid sequence | MLPSLGNCFFHGSLQSTDQKIPLMRPHHQGLGCQLQSHADSQQPLSWSLPKKLGRVVIIT VAACCLNPLSSLGEGEQSSLWLLAA |
Secondary structure | LLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLEEEEE EEHHHLLLLLLLLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |