NONHSAT077171
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077171 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2369 nt |
Genomic location |
chr2+:225626184..225628552 |
Exon number |
1 |
Exons |
225626184..225628552 |
Genome context |
|
Sequence |
000001 aggatggtct ctatctcctg acctcgtgat ctgcctgcct ccgcctccca aagtgctggg attacaggcg tgagccaccg 000080
000081 cgcccggACT Gttttttttg tttgtttttt tttgtttttg ttcttttttt tttAAAGTGA GCAGAACATT GCGGCTCTAG 000160 000161 TGAAGGTTAC GCATAGGCAA GCAGACGGGG TGTGAAATTA GGAGGAAGGC AAGGGGCTCC CTGCAGAGAA TCTTGAAGGC 000240 000241 CAGTCATGCC TGCACTTCGT CATTTTCTCA ACAAAATATA TTAACATATA ACATTTAATA TATGGTATAT AGTTTTTCGC 000320 000321 TGCTATAAGT GTAGGGGTGG AGGATATGGG GGCCACTTGT AATATGAGCA AATAATAACT TTGATTTAGT ATCATTTTGT 000400 000401 CACATTTGTT CTCAAATATT TATTATTTTC TTAACTGCTC ATGGGAGTAC TGAAATCCTA TAATATATGT ATTTTTGGCT 000480 000481 TTCTGGGGTT TGACTAATAT AAGATGATAA ATCATCCACC TGCAAACATA GTGGACCTCT TCTGCAGAGA GACCAACATT 000560 000561 CAGGGTTCTA AAAGCCAAGC CTTCCCAGCA ATGTTCTCTC CATCTCCCTG TGACTACATC CCGCAGAAAG CTGTCATTAG 000640 000641 GAAGGAAACA TGGTGTTTGG ACCATTTGTA CTGGTTTCTA AGTGAGTGTT AACACAGGAA TACAGATGTA CTATGTGAGG 000720 000721 TTTGGATAAT GGACACTCAT TTATAAGGTA ATTGTCACCA AAAATAGGGG ATTATGTTAA TTTTTTATAG TCTGGGCATT 000800 000801 TTGCACTTTG AAATGAGAAT GAAAAAAGAA GTAGCTACTG AGTGGGATGA TGAATGAATG AGGGGACAGA GCCAGGGCTG 000880 000881 ACATCCCAAG TATTAGATCC ACATATTCTG TGTTGGATCT TTTCCAGGGT AAATTATAGA GGAAAATGCC ATTTGTCTTA 000960 000961 TTTTCATCCT TTCCATCTGT GGAACTTGAA GAGTTACTAC CATTTTTTAT TGAGCTTGTT TTGAGGAGTA TTAATTTAAC 001040 001041 TTTATACAAA GATGAAAAAG AATGTAAAAT AAGAATTTGG TTTCTTGGCA ATTCGAAATG AGGTCACTGT TTTACAAGGC 001120 001121 CTTATCATCC GTACAGTCAT TTTTTTAAGG GTAGCTAATT AGCGGAGGAT Ccagtggagt ttttataccc agtatgtcta 001200 001201 agaatcatgt gggcttgggt actggactcc actccagggg gttctatttc agaagttctt atggcacaga gaagtatgca 001280 001281 cttgaacagg tgttttgtct gattctgaag caagtggtcT TCTGTCCATG AGTGATTACT ACAGTGAGAT AGATAATAAA 001360 001361 AGTTTGTTTG AACTGGGGCC TAcacatgcc tatgggatct aggcaggaaa tataaataac aggggctgcc cgatagaagc 001440 001441 tgattagggc ttggtgccta ttgctgcaag ctggaaaaca catgtaaatg gagcaacagt gtctcaattt tcacttgttg 001520 001521 ttgtgatggg ggagtgcgat tccaatactg ctaaatggcc tgagcattca acagatatca gaaagctgga aatctataca 001600 001601 aagtctcgta atatttaact gttgacacct aattgaaata aaataaagac tacgtgtttg gcagataaaa tacgtatgct 001680 001681 ggattccatc tctgagcagc cagtctgATG TGTCTGGTCT AGAGAAAGGA AGAAATAAAA GGTGTTGGGA TTGTGCAGGG 001760 001761 TGAGTTTCAA CGCTGTTAAG GCAGAGTGGT CTTAGGTGAT TCTCTTTAGA GAAGCTGTAT TTAAACTTCT TGTTCTATGA 001840 001841 ACAGTGTCAG GGGCAAAACG GTGACATGAT CAAAGATATT GTGGTTTGTG ATGCAAAAAT AGAATATTTG GCACCTAACA 001920 001921 CAAGCACAAA GATCTATTAT TTTCAATTAC TTCCTTAGAG TTTTTTTGGA AGATTTATTT TCAGATTTGG AGGTAACCCA 002000 002001 TTGCCAACCG TGTCCTGGGG GCATGGGAGA TGGGTGGATT GGCATGGGCA AGAGGACTTG AGCCTACAGG TGGAAGTTAG 002080 002081 GTGGGAGATG ATATTGGAGG CAGCATCTTC CTGGGTGCCT GGAATAGTAA TGTCTAAGGT GGCCTAAAGC TACACATGGG 002160 002161 GAAATTAAAA GAAAAGACCT GAGATGCTGA CCCAGACAGT CAGGAACCAA GAGAACTGGA GGCAGAATGA AGCTGGGAAT 002240 002241 AATGCTTTGG GCCAGAGCTC ATCAAAGGGC AATCTTTTCT ATAAAGAAGT GAGCTCTATT TGAGAAAAGA ATAGTTAAAT 002320 002321 GTGTCTTGAg gccaggcgtg gtggctcatg cctgtaatcc cagcacttt |
Predicted Small Protein
Name | NONHSAT077171_smProtein_503:691 |
Length | 63 |
Molecular weight | 7189.2356 |
Aromaticity | 0.129032258065 |
Instability index | 63.8790322581 |
Isoelectric point | 6.00042724609 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.0443132207839 |
Amino acid sequence | MINHPPANIVDLFCRETNIQGSKSQAFPAMFSPSPCDYIPQKAVIRKETWCLDHLYWFLS EC |
Secondary structure | LLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLHHHHHHHHL LL |
PRMN | - |
PiMo | - |