NONHSAT077204
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT077204 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2502 nt |
Genomic location |
chr2-:228085768..228189880 |
Exon number |
14 |
Exons |
228085768..228086200,228087098..228087210,228092486..228092608,228093197..228093348,228102802..228102890,228123894..228123999,228129385..228130154,228130591..228130651,228133069..228133159,228133344..228133485,228144199..228144291,228146420..228146505,228170176..228170371,228189834..228189880 |
Genome context |
|
Sequence |
000001 AGCGATGCGC AGACATCTTT GTTGTGGGCG AAACGAGGTG ACCGCAGagt ctgtcaccca ggttggagtg cggtggtgtg 000080
000081 atcttggctc cctgcaacct ccacctccca ggttcaagcg attctcctgc ctcagcctcc caagtagctg cgattacagg 000160 000161 cacccaccac catgAAGAAT GGCATTTTTA AAAGATGGCT TTCTTAAAAA AGGATACTCA GTTGCTCTTC TACTCATACC 000240 000241 AAGTCCTGCA GACACATTCT GGGACTGCAC CTTATGAGTG CTGCTCACTC TGTTTCCTGC AGAAGACATA CAGAGCCGTT 000320 000321 CGCATAGAGG GCCATGATTT TGATTCAGCA ATTCTTCAAA CCACTGATGC TGGTTGACCA TTTGACTTTG TTTTTGAAGT 000400 000401 ATTTTTTACA TACagtgtac agAACATTTC CGCTGGATAT TTGGATACTG AACAGGAGTA ACAAGAGGAA CAGCTCCTAC 000480 000481 CTCCCCCCTG CCCCTTCCCT CACAAGCCTG TGAGTCAGGG CAGGGGCAGC CACTGAAAGT AGCAGAGGCC TTCATAAAGG 000560 000561 AGAAGTTGTC AGGTAGACCT TTGGATTAAC TCCCCAAAAG CAGCCCCCTA GGAGACAGGC GACAGCACCG CAGTcagggg 000640 000641 atgcaggcgt ggaggcactt ctccatgttg ccatcatgtg aagaaggaca tgtttgcttc tgcttctgcc acgagtGTTG 000720 000721 AAGGCAATGG TGATGAAAGT AAATATTTAA AAACACTACC ATAGCTGTCC CAAATTTCAG AAAAACAAGG TACCACTGGA 000800 000801 ACCATTTAAT TTTGTTGGAA CACAGAATGA CCATCTTGTG ATCAGTTTTC TGCATCTTTA AAATACCTGG AAGGTCATCT 000880 000881 TTAAATAGTA CAATCTGATA AAAGTTTAAT ACTTAGTGTA GACTTATATG AATACTTCTA CATTCATACA TTTTTGTATA 000960 000961 CTTATACATT TTCATACTCA ATTAATGCtt aattcaaaaa atatctgagt acctgcagtg ttccccatgc tacatactgg 001040 001041 gcttaaacag ccaaaaagac acagtctttg acctcaaaat actttgattc ttgtaagaaa aactgacaaa gacaaagaga 001120 001121 aggcaatgtg aaaacttcta cagttgggat aaccttggag gttacaggat gtggactcac tgaaagcttt ctgctggact 001200 001201 tgaacttgaa gctgaagtct gaaggacaga tgggtgttgc ttagcgaagg gaaagtagga agcaaagacc cctggacaga 001280 001281 gtgtagcagg cacagaggga gcatgacacc ttcgggagag agccGCAAGC ACCTGGGCCC AGATCCCAGC TTTAGCTTCA 001360 001361 TTAGCCCTGT GAACTCTGTA TGTCAGCCTT GACATAGAAA AAAAGAGGAT ACTAAACCTC CATCTTAAAA GAGACTTGGA 001440 001441 AGAAGCTGGG ATTATAGGCA CACCACCACA CCTGGCCCCA GAAAAGGGAA TCCTTGACCT GCAAGAATCG AGGAATATTG 001520 001521 TTTCTGACAT GCTCAGTGGA CCTACTGCTG GTGTTCTTAA CCATTTCCTT CCTAAGTGGA ACTTCTTTTG AGGTTAATGT 001600 001601 TTATATACAA TTACTTTAAC ATTGGATTTG GGAAATGGAA CAACATACTG CGGATCTTTC TGCTACCGAT GAAAGAAGAA 001680 001681 GCCAGCATGC TCGTTCCTGT GCATGCTGGT GAAACAGACG TGGCCTGCCC TGCCTTTCTC CAATCTCTCT CCCGcagccc 001760 001761 agcccagccc agccTGGTTT AATAGCAGGG GGAGTTGGCA CCGTTCACAG CTGGTTAACA CCCTACTGAG CAGGTTTTGA 001840 001841 ATGCAGAAAG ACTGAGAAAA CTTCACTATT CATGTAAGAA AAATAGGCTC CACGGGATCC CTTGATCAGG ATGGTGGTAG 001920 001921 AGGAAATGAA CTTCCATCAG CACTGTAATG ATctcaGAGG GGGGACAAGT TCACAGTGTT GGGGAGAGGA AAGTGTCCTC 002000 002001 TTAGCTGCCT CCCATGACTT CAGGGGCCCA TTTGATGATA ATAGGACACT CTCTGGACAA AGCCTGCAGa tggatttgat 002080 002081 caagcaagag agctgaggat gaatgcgaaa aaaaaaaaag tggtcctgat ggctccttga ccatgaaata aaggtcatca 002160 002161 atgagggaag acaggagact ccaggagcac agagacagtg acaaagcaat ggataaagga attgtgggta ccagtgagat 002240 002241 ggaaggatta tgggatttgg agtcctaggg acaaagatgg aaagactgga gggtgcttgg agaggaactg tgattggtga 002320 002321 tgtcaagatc aagagtactg tcttacaggg gaaccagtga cagaggtcaa gaagaagatg agaccactgC AATGGTAATT 002400 002401 TCATGACATG TACAGGTGTT GATAATTCCT TTGTGCTGGA CAAGGTAAAA CAAAGAGGGG TGATGACTTT GAAATGTTCT 002480 002481 TAATAAAAAA TTCCAGCAAT AA |
Predicted Small Protein
Name | NONHSAT077204_smProtein_1910:2095 |
Length | 62 |
Molecular weight | 6883.5011 |
Aromaticity | 0.0655737704918 |
Instability index | 53.537704918 |
Isoelectric point | 4.62506103516 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0365407424231 |
Amino acid sequence | MVVEEMNFHQHCNDLRGGTSSQCWGEESVLLAASHDFRGPFDDNRTLSGQSLQMDLIKQE S |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLHHHHHHLLLL L |
PRMN | - |
PiMo | - |