NONHSAT077882
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077882 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2758 nt |
Genomic location |
chr2-:242026509..242041747 |
Exon number |
5 |
Exons |
242026509..242028780,242029395..242029459,242033692..242033847,242036658..242036842,242041668..242041747 |
Genome context |
|
Sequence |
000001 GAAGGACGGG GGAGGACCGC TGCTTCCGGC GCCGTAACTG CTGCCATCTT CTCCGCGCTA TGGCTGCGTT CGGCCGTCAG 000080
000081 GGAAATTAAA GAGGGTGCTT TACTGTTGCC CTGAAATTTT CACCATGCGC CAGCAGGACA TTAACGACAC TGTCAGGCTT 000160 000161 CTCAAGGAGA AGTGCCTTTT CACGGTACAG CAAGTCACCA AGATTTTGCA CAGTTGCCCC TCTGTTCTTC GAGAGGACCT 000240 000241 GGGTCAACTG GAATACAAGT TTCAGCAGCC TCGTCTTACA GCGTGACTGC AAAGAAAAAG ACTTTTGTTT TGCAAAAGAA 000320 000321 AAGCAGCTCG GTGACTCCGT CCACATCGCC ACAGTTGAGT CAGATGGCAG TGGCAGTCCT TTGCCAGTGG AAGGAGTTCC 000400 000401 TGCTAAGGGG AGGTGCAGGA GGACTAATTT ATTATTGTGC AACTGCCAGT CCTGCGCATT CCAGCTACGC TAAGCGCCCT 000480 000481 GCCCAGGCAC GTAACAAAAC ATAGACCTGT TTTGAAGTGG CTTGTTACCC AAGGGTGCCT CACTCATCTG CGCCACCAGG 000560 000561 AAGATGAACT GTGAGGGCTC CTATAAGGGG CAGGAAGAGC AAAGCTGTCC TAGGCCAACC AGAGATTCAT CTTTCATGCA 000640 000641 GTGACATGTT GATAAAAAAT GATGGTCAGT ATGAAACTGG TAACAGGTTG TAGATGGCTT TCTATGGTAT ATCCCAGTCT 000720 000721 CTTGCAAACG ATTGTGAAGA ATGCCAGTGT TGTTTAAGAT TCGGCAGTTT GTGTGGGGAG GTGGGGGCAG GATGGGGTTT 000800 000801 GGTTGCCAAA AGAGTTTGGG AAATGCTGGC TTAAACAAAG GCGAGAGGAA GTTCCTTTCA CGTCAGGATT TATGAATGCC 000880 000881 TATGAGCCCA GTGTCAGTGA CGACTTTCTA GCGGCGGTCT TCAACACTTT CTAAATATTA AGCGATCAAG GCCCCTGCCC 000960 000961 CACTTTTAGT TCCAACAGAA TGCCGTTCAC AAGATCTGGG AGGCACTCTC TCAGCCCTCT CCTGGAGCCC CCGGAATTTC 001040 001041 TCAGCAGCCC AGGCCCTCCC GCTGCCCGTG GCCCCTCCTC CCAGGTGCCA GGTGGTCTTC CAGCCTCTCC AAGGGCCCAC 001120 001121 CCCCCTGCCT CTTCCTCCCA CTGCAGCTGA TCTAGGGGTT TCTTGGCCAC ATTTCCCTTG AGAGAGAGTG GGATTTGCCC 001200 001201 TATCCACAGA GAGCCTCATT TCCACCTGAA GGTGTATTTG TCAGTGGCTA GACCAGGTTC ATGTCTGTTT CCCCTTGGGG 001280 001281 ACTTCTGAAC CTTCCTGCCC GGGAGTCTGT AACACAGCAG CACAGGACCG CGCTTCCTTT AGCAGTGCTG AGTAAGCAGG 001360 001361 CAGCGGCACT CTGAGATCCC GGGGCTGGGC AGTCGCCCCC CACTTCCCAG CAGCTCTGTG GTAGTGGGGC GGGAGCAGCA 001440 001441 GGGACGTACC TTAAGATTTC TCCAGTGTCT GACTCTTACT TTGTTTCCTG AAATAATTAG AGAAAAGTCG TTTAATGAAA 001520 001521 AAGAGACTGT GTACCTTGAA TTCTACAGCT ACCTCAGTCC AGGCTGCCTG CTGAGATCCT GTCTTTAGCT CACATACATT 001600 001601 CCACGGTGGG GGACACCATT AGTCCAGACA CCGCTGTGGA GATTAGCATT TTAGTTTGTG TGCGCCCGCC TGGCTTGAGG 001680 001681 CAGTAGTTTA GGAATGACAA GGCTAGAAAC CTGGCTGGCT GTGAGTCAGA GAGAGAGAGG ATGGACGTGG GAGAAAGCAA 001760 001761 GCAAAAGCTA CCCTAGGGAA GAGCCGGTGA CGTGCACAGG CCGAGCAGCA CGGCTGGTGA GCTGCAGGCT GCGGCCTTGC 001840 001841 CCGGACACTT GGTAATGCCA AACAAGTACG TGTGGCTACT CATTGGTCTA TGAGGACGAT GACAGGCTTC GACTCTGTGG 001920 001921 TTTCTAAAGC ATATAATATT CTCACGTACT TCTTTCAGCA AACGCCAAAC AGTAGTAATT CTTGTAACTA CCTTGAACCC 002000 002001 TTTGTGGAAA GAACCTGGGT GTGAGTGAAT AAAAAGTAAA GAGCGACGCG CTATATCGGC CATTAAATAC TCGGGGCTGT 002080 002081 CCGTAACACC CTGTGCTTCC CAATTGTAGC ACCATGTTCT GTGTGAATAT GCATAACCAG AGTGACCCCC CCCAGCACCC 002160 002161 AGCATGCCCG GCTGTGCCCC TCTGGGTATG CTCACATGCA CATATATGGA CATACAGTTT CGTAGCAGAA CGTGGCTGCC 002240 002241 CAGGGGCTGC CTATCTGGGC GAGTAGACCG CCTGGCTCAG CCCACAGGCC TGCAGCATCC CATAGCACCC CGCCCTTGCC 002320 002321 CCATCACCCT GTGGGCTACA TGCAGGACAC GGCATGGGCC TGCTCCCCAG AGGCACCTGT TTGGGGTCTT CTTGAGGCTT 002400 002401 GTGCTTTCAC AGCTCTCTTT GAAGCAGATG TCTTGGTGAA CTCGGTAGAC TCTTTTATAC CTGTTGTCAC AAGAAAGCTT 002480 002481 TGTAAAACCA GACAGTGAAG CAAAATGTTG CCAACTGCTT AACCTAGGCT ATGTGAACCC ACAGTAAACC TGAAGGTGTT 002560 002561 TGAGGGAAAA ACTGCTATTT TCTGAATGAA ACGTGACCTC CTATTGATGT ATTAAAATGT CTAACATAAA GGTCATGTGA 002640 002641 TTTGTAATAA ATTTATTGTG GTACAGTAAT ATGCATAAAA TAAACCCATT TTAATGTGCA TTCTGATGAG CACTGACAAA 002720 002721 GGATATGGTA CTAAAAATAA AATGTGAAAT GTCAAAGA |
Predicted Small Protein
Name | NONHSAT077882_smProtein_2339:2497 |
Length | 53 |
Molecular weight | 5729.5837 |
Aromaticity | 0.0961538461538 |
Instability index | 43.1557692308 |
Isoelectric point | 4.59368896484 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0242202987301 |
Amino acid sequence | MQDTAWACSPEAPVWGLLEACAFTALFEADVLVNSVDSFIPVVTRKLCKTRQ |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHHHHHLLEEELLLLLLEELLHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii |