NONHSAT077961
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077961 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4913 nt |
Genomic location |
chr2+:242626385..242636650 |
Exon number |
3 |
Exons |
242626385..242627477,242629370..242630068,242633530..242636650 |
Genome context |
|
Sequence |
000001 GCCGCCACTG GAGCCGTGTC CTGGGCTTCC GGGGCGGAAA CTGGGGCCCC GTGTCCCGTG CGGGCCTCCG TCCTCGGGCG 000080
000081 AGCAGGGCCC TTCGCTCCGG GAGGGGAGGT GACGCGGCGC GGGCTGGACG GCCGGAGACG CGGGGTCAGG GCGCGGACGA 000160 000161 GGGGAGCGCA GGGTCGGAGG GGCTCCCGGA CGCTGCCCGC CCAGCGTCGG CTCTCGTTGG CCCCTGGCTG CGCGCAGCGG 000240 000241 GCCCGACTCT CAGGGCCCTG CGGTGCCCGC TGCCAGCGTG AGGGCTCCGG TCACGCGGCG CGCGAGACGA ACGAGCGAGA 000320 000321 TGCTTCCCGA AGCGCGGGGC CCAGTGCAGG GGCTCAGCCG GGGCTCCTCC CAAAGCTCAC CTGGAGCCCA GCACGACTGC 000400 000401 GTTCTGGAAA CGCTGTGTTT GACAGCAGGG GCAGGATGGG GGGCTGTGTA GACGCTGGCC ACGTGGCAAT TGTAGGAGAA 000480 000481 CCATGGGATC GATAAATGTT CACTGTTGTC CCTGAAGCGC AAAACTGCAG GGCTCTGGAA AGTCCGTGTG TGTGtttttg 000560 000561 ttgtttttgt ttgtttgaga cagagtctcg ctctgtcacc caggctggag tgcggtggcg cgatctctgc tcactgcaac 000640 000641 ctccgcctcc cgggttcaag cgattctcct gcctcagcct cccgagtagc tgggactgca ggcggccgcc acgacgcccg 000720 000721 gctaattttt tgtattttta gtagagacgg ggtttcaccg tgttagccag gatggtcttg atctgacctc gtgatctgcc 000800 000801 cgcctcggcc tcccagagtg ctgggattac aggcgtgagc caccgcgcct ggccGAAAAG TCCGTTTTAA AAGATGATGT 000880 000881 ATACAAATTA TAGCACGGAG AGGGAACggg caagttgttt cctctttcca tgcctccaac tcctctgaaa tgtgggtcat 000960 000961 gatgataata ggaaaaactg tctctgccat agagaggtgg aaaaagtccc gcgaagtgtc cccggtatct agaaagcgct 001040 001041 cagtagtgtt tgctgttatC TTAGGGATAT CAGGCTGCCT GGACATTTCT CAGAGGATGA AGGGGATTGT AGGAAGGAAG 001120 001121 ACCACCTTCC CGGGGCTGGG CAAGGCTGCG GTACTGTCTC TCATCAGGTC CAGGAGGACT CAGCAGGCTG ATGCAGAGGG 001200 001201 ACACAGCGCA TCCGCCTTGG TGGATGCATG GCTTTCCTGG CTCCCCTGGG ACGGGGGAGG AGGGTGAAGA TGGAGGGAAT 001280 001281 CTGGCTGGCT GGGCCTTGTG TACTGGGGGG TGGAGGGCCC ATTTGACTGC AGGAATTGCT CAAGCACATA AGCACCTTGA 001360 001361 AGTGTGTTAC TAAGATACAA GAAACAGGTT TGCTTTTGCC TATTCCAGCA TGGTGTACCT CTCttaggat accttttagc 001440 001441 acaggtagca gaataccagc cagcctcctg tggctcacag cattaagata tttaatcatc tgacattaca tgaagtccag 001520 001521 tgttaggcag gcaggagctg ctcccgtgac tcagtgacat caGGTTGGTC CACATCCTAG CAGTTCTCTT GGTGTTCCTG 001600 001601 CGTGATCAAA GGATGACTGC CACACCCCAG CCTGCTGACC TCAGCCCTGG CGTGGGCATA GGAGGGTCTG CGTGGCTGAG 001680 001681 CATCCAGTGT CCTTCGTACT GCCACTGACA GCCTCAGGCC TGATTTCCAG CACTGTCTGT CCAGGAGCAA TGGGAGCAAG 001760 001761 AGTCACTCCA CGAGACTCTG GAGGCCTGAT AGACAAAATA CATGAAGACC AGTTTCTACA CAGAGAATCA CTAAAAGATg 001840 001841 gccaggcgcg gtggctcacg cctgtaatcc cagcactttg ggagaccgag gcgggcggat cacaaggtca gcagatcgag 001920 001921 accatcctgg ctaacatggt gaaaccccat ctctactaaa aatacaaaaa attagcccgg cgtggtggcg ggcgcctgta 002000 002001 gtcccagctt ttcgggaggc tgaggcagga gaatggcatg aacctgggag gcagagcttg cagtgagcca agatcacacc 002080 002081 actgcactcc agcctgggcg acagagcgag actccatctc aaaaaaaaaa gaaTCAGTaa aagatataaa ggagaaaagg 002160 002161 acagaaccac aaataggcaa caaatatgtt aaaaaaaagt ttagcttcac ttaaaatgaa ataaatgtga ttaaaatatt 002240 002241 taaggttggc tttttccccc ctctaatgag ttagcgaagg ttaaacattt aaaaagcctg atgaaatcta gggttggcag 002320 002321 aagtatggaa agcaaccagt ggccatgctg gttggtataa ccttcccttt gggcaattca tttataagta tcagcactta 002400 002401 aaatgtgcaa tactcggcca ggcatggtgg ctcacactgt aattctagca ctttgggagg ccgaggcgag tggatgatga 002480 002481 ggtcaggagt tcgagaccag cctggccaac atagtgaaaa ccggtctcta ctaaaaatac aaaaaaaatt ggtagggctt 002560 002561 ggtggcgggc gcctgtagtc ccagctactt gggaggctga ggcaggagaa tcgcttgaac ccaggaggag gagattgcag 002640 002641 tgagccgaga ttgcgccacc gcactccagc cttgcgacag agcaagactc cgtctcaaaa aaaaaGGACT GGTAAGACAA 002720 002721 TGTGGTattc ttgctcctcc tcccactgtt agttgtgggt ataatgtttc tcccattcaa cctgggtcgg ccccagtgac 002800 002801 ttgcttgacc aatagaatgt agtgaggtga tgtcttaggg ctaccaaagt gaggtcacaa gagccggtgg cttccacccc 002880 002881 agcctcctgg gactctgtga gacccgctgc tactgagact gctgtgctgg agaggccaca tgtgggtgtt ctggcccacg 002960 002961 gtgccagctg acatcagcct tccagccacc ccagtgatct cttttctgtc acactggaca ggacagtcac ctggtggagc 003040 003041 tgctgaaatt cctggcacgc tgtcacatat aacaaaatag ttcttggcgg cacggtggct cacgcctgta atcccagcac 003120 003121 tttgggaggc caaggtgggt ggatcacaag gtcaggagtt caagaccagc ttggccaatt tggtgaaagc ccatctctac 003200 003201 taaaaataca aaaattagct aggcatgatg gcacgcgcct gtagtcccac ctactcagga ggctgaggca gcagaattgc 003280 003281 ttgaacccag gaggtggagg ttgcagtgag ctgagatcgc gccaccacac tccagcctgg gtgacagagc aagattccgt 003360 003361 ctaaaaaaaa atggttcttt taaaccacta agttttcagg ggtctgtaag gcggtgatac ataatgggaa caGATACTTG 003440 003441 Cagttctatg tatagccatg ttcattacag catgatttat gatactgaaa tattgggaac atctgtaaag agtttgttaa 003520 003521 agtctgatac accactacaa tgaaataGAT CTAGTCAGTG GGACAAAGCA GGGTGAGTAA AGCAGGGCCA GATGCTCACA 003600 003601 AGGAGTATTC AGCTAAAAAT GTAAGACAGg ctgggtgcgg cagcttatac ctatagtccc agcatttgcg gaggccaagg 003680 003681 caagaagatt gcttgagccc aggaggtcaa gctgcagtga actgtgatca caccactgtc ctccagcctg ggcgacaatg 003760 003761 tgagatcctg tctcaaaaaa caaaacaggc tgggctcggt gtctcatgcc tgtaatccca ccactttgga aggccgaggc 003840 003841 gggcagatca cgaggtgagg agttcgagac cagcctggcc aacatagtga aaccccgtgt ctactaaaaa tacaaaaaat 003920 003921 tagccgggtg tggtggtggg tgcctgtaat cctagctact cgggaggcca aggccggaga atcgcttgaa cctgggaggt 004000 004001 ggaggttgca acaagccggg atctcgccac tgcactccag ccggggtgac agtgcaagac tccatctcaa aaacaaaaac 004080 004081 aaaaacaaaa accccccaaa acaaaaaaca aaaCAGAATG AAAAGTAGTA GAAAAATGGT GAGTCAGTAA AAGAACAACC 004160 004161 CCATGAAAAA ATGGGCAAAA GTgctgggtg cggtggctca tgtctgtaat cccagcactt ggggaggctg aggctggagg 004240 004241 agtgcttgaa cccaggagtt ggagaccagc ctgggcaaca tagatacccc aactctacag aaaaaaaatt aaaaattagc 004320 004321 caggtgtcat ggtgtgtgct tgtagtccca gatattgagg gctgaggcaa caggtccttt gaacccagga ggtcgaggct 004400 004401 gcatgagcca tgattgtgcc actgcacttc agcctgggtg acagagcaag accctgactc taaaaataat aataaCCAAg 004480 004481 gctgggtgtg gtggcttatg cctctcatcc cagcactttg ggaggccgag gcgggcagat cacaaggtca agagatagag 004560 004561 accatcctgg ccaatgtggc gaaaccttgt ctctactaaa aatacaaaaa ttagctgggc atggtggcag gcacctgtaa 004640 004641 tcccagctgc ttgggaggaa gaggcaggag aatcgcttta acccaggagg cggaggttgc agtgagccga gattgcgcca 004720 004721 cggcactcca gcttgggtga cagagagaca gactccgttt caaaataata ataataatat aataatcaaa aattggaagt 004800 004801 aaccaagatg ctctttaata agtacatggg tggccagggg ctgtggctca tgcctgtaat cctagcactt tgggaggccg 004880 004881 gggcaggcgg aacacaaggc caggagatca aga |
Predicted Small Protein
Name | NONHSAT077961_smProtein_1190:1372 |
Length | 61 |
Molecular weight | 6455.094 |
Aromaticity | 0.1 |
Instability index | 40.5316666667 |
Isoelectric point | 5.84796142578 |
Runs | 6 |
Runs residual | 0.0497340425532 |
Runs probability | 0.0375080963316 |
Amino acid sequence | MQRDTAHPPWWMHGFPGSPGTGEEGEDGGNLAGWALCTGGWRAHLTAGIAQAHKHLEVCY |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLHHHHHHHHHHHHHHHEEEEL |
PRMN | - |
PiMo | - |