NONHSAT078567
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078567 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2990 nt |
Genomic location |
chr20-:9748764..9751753 |
Exon number |
1 |
Exons |
9748764..9751753 |
Genome context |
|
Sequence |
000001 TATGAAGATT GGTCATTGCT ATGGCTGCTA TAAGAAGTCT TGTTTCAAGG ATGTTTTTTC TTGTTGTGAC ATCTTGCTTT 000080
000081 CTTATATTCA TGTTCTCTTA CGTTTATACC CAGGAGTCTC CTCTGTCCTT TTCTAATCTT TCTTGCTGGA CAGTTTTTTC 000160 000161 CTTAAGACAG CTCTATCTGA GTTGTTTGTC CCTATGGCAG CCATGAACAA TAGAGTAACT ATCTTTGCTG TTTATCTATC 000240 000241 CTTGACAACT TGATGTCCAA CTTGGCACTG AGGATAACTT CTTGAGGGCT CATATTTCCT TTAGGGCCTC AACTCCAACG 000320 000321 ATTCTTCAAC CCCACTGTGA CCTGAAGTCC ATGCATCCTA CCCCCTTTCT GTTGTCTCTC ACTCTCTTCA TGTCCCAATT 000400 000401 TTCTACTGTT TCAGCTCACA TTTTACTCTG CATTACTCTA ATTACTGTCT TGCATTTTCT AGGCACACAT TGCTCCTTTC 000480 000481 CCCTTCCTTT GTAATCACTT GGCAAAAGTC TAACCCAGAT TACATTCAAC TCTTCATGCC CATCTTGCCT ACACTCACCC 000560 000561 AGCTAAACAC AGATGGAGTG AAACACACCA TTGTGCTGGC TCGTTTCACT TTACAGCCAT GACTACAAAC CACGCATGGG 000640 000641 TCCTTAGAGC TGCCGAGTAG TCAGATTATG TTTCTGGAGC CCCTTTACTC TCCTGTTCTT TTAGGTAACC ATTTTATACC 000720 000721 TTATCTTCTC CCTCATTTTC ACCTTCAGCT GATTTTCTTG TTTCTTGTTT CTTTAAGAAA ATAGAAGCCA TCAGAATGAG 000800 000801 ACATCCCCAT GTCCCCATCA TCGCACTGTC AACCGCACAT CTGCACTCAT CTGCGCTCAT GTTCTCTGCC TACATTTCTT 000880 000881 TTTCTTAGAA TGAACTGCCT GTGCTTCCTG CAGAGTCCAA GCCCTCCTCT TAGGAAGTCG ACCGTCCTCT TTCGCCTGCC 000960 000961 CAAGGACATC ACTCTGGCAA CTCTTCCCCC TCTCCTGCAT TATCTGTTGG CCTTTCTGTG TCATACACAT AAGCTCTATT 001040 001041 TTTTCCCCAT CTAAAAAAGA AACTCTTTTG ACTCTAGGCC TCTCCAGCTA CCACCCTACT TTTCTACTGC CCTTTAGAAA 001120 001121 AAACTCCTCA AAAGAATTAT TCTCACATTT CTGCAGGATA ACATCACACA TTCTCCTAGT TCTATATTCT TCTACTAGCT 001200 001201 AATTTCTTTG TACCATATTT AGTTTTTAAA GAGCTCCTTT CTCTATAAAT ATTTCATTTC AATGCCAGAG GTCATATCAG 001280 001281 ATGGAGAATG GCTGGTTGGT GGTTTAACAC TGATTAAAAG AAGAGGAAAA GCAGCCAAAT ATTTAGAGAA AAGGTGAAGC 001360 001361 CATTCCATCC CATCACCTTT GTTGGAGCAT TTCAATTTGC TCTCTACCTT AGATGTGCTC TCTAGCCCAT AGCTGAGCTA 001440 001441 AAGGTATATT AAGTCTGTCT AACCGGGCTT GAAGGGAAGC TGGAAGACCA TTTGTTCTTT TAAATCTCTT TAGTTTGCAA 001520 001521 TTGTCAGATT CAATTTTGAG GGGAAGAGTT CAGAGCATCA TTGAAAGTAA AAAAGATGGG GGAAAGTGAT AGCCACATGA 001600 001601 TAAATTATAT CAAAGTCAAA GTCATCGCCC TATGGCAATT TTTGCAAAGA AGTATTTTTA GCATGGATAG CTAAAGGGTA 001680 001681 GAGCATGTCA CAGAGACACC TGTGTAGTTA TGCAGACTGG CAGGGATGTA GAGGAACTAT TAGAACCCCT GCCTTGTGTA 001760 001761 TCAATGGCAT ATTTTATCCA TGGGCAGAAT TAACAGATAA TATTCGCTAT ACTGATTAGG AGAGAAGACA GCTTCATCTC 001840 001841 CACACAGCTG GAAATATGTC CTGCTTCAAT GTCAATTTGT TTATGCTGTG GGCCAAGTCA TGCCCCCATA TGTCTGTATT 001920 001921 TTCACATCTC TAACAGATAT TAATTGCACT AGATTTGCTG TGCTGTACTT TTGATTAGTC AGAAGTTCGG CCTAGTAAGT 002000 002001 TAGAACTCTG TGTTCTCACT GTGTTAAAGG GATGCTTGTC ATTATATTGT TTTGAAATTG TTTAAAAGAT ACAGTTAGGG 002080 002081 AGGCATAGTC CTTGATCTTT TAAAATCCTT TTAAAGAAAT GAACGGGGCA ATTAGATAGC AAAACTGAAA ACTTATGGGC 002160 002161 TTTTATTTTT TAATTTTTAA TTACTATGGG AACATAATAG TCATATATTC TTTCATTCTT TTTTTCCCTC CCTTCTTGTT 002240 002241 TAAGTTAGGC CAGAGTCCAG TTTTCTTTAT GGTTTTTTTT TTTTCTTTCT TTCCCTTTTT TTTTTTTTTT TTTTTGCGAT 002320 002321 GGAGTCTCGC TCTGTTGCTC TGTTGCCCAG GCTGGAGTGC AGTGGTGTGA ACTTGGTTCA CTGCAACCTC AGCCGCCTGG 002400 002401 ATTCAAGCGA TTCTCTTGCC TCAGCCTTCC CAGTAGCTGG GACTACAGCC GCGCGCCACC ATACCCGTAT AATTTTTGTA 002480 002481 TTTTTAGTAG AGACAGGGTT ATGCCATGTT GGCCAGGCTG GTTGAGAACT CCTCATCTCA AGTGATCCAC CCACCTTGGC 002560 002561 CTCCCAAAGT GCTGGGATTA CAGGTGTGAG CCACCGCGCC TGGCCCCTTT ACTTTTTATT TATTCTTTCT AATTTCAACT 002640 002641 TTTATTATAG ATACAGGGGG TACATATACA GGTTTGTTCC ATGAGTATAT TGCAGCAGGT ATGGGCATAG TACCCAATAG 002720 002721 GTGGTTTTTC AACCCACAGC CTCCTCCCTC CCTCCCCCAT CTATAGTCTA CAGTGTCTAT CGTTCCTATG TTTATGTCCA 002800 002801 TGTGTGCTCG ATGTTTAGCT CCCACTTATG AGAAAGTGTG AGATTTGGTT TTCTAAACCC TGCACGTGTA CCCCTGTGTC 002880 002881 TAAAATAAAA GTTGAAATTA GATTAAAAAA AAGTGAAGAC CCTGGTATAA CTTAAACAGG AAGAAAAAAA GAATTAAAGA 002960 002961 TTATATTACT ATTACGTGCC CATAGTAATC |
Predicted Small Protein
Name | NONHSAT078567_smProtein_2318:2524 |
Length | 69 |
Molecular weight | 7220.2151 |
Aromaticity | 0.0441176470588 |
Instability index | 49.9308823529 |
Isoelectric point | 6.88494873047 |
Runs | 15 |
Runs residual | 0.0800874403816 |
Runs probability | 0.0471883648354 |
Amino acid sequence | MESRSVALLPRLECSGVNLVHCNLSRLDSSDSLASAFPVAGTTAARHHTRIIFVFLVETG LCHVGQAG |
Secondary structure | LLLLEEEELLLEEELLLEEEEELLLLLLLLLHHHLLLLLLLLLHHHHLLEEEEEEEEELL EEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo oooooooo |