NONHSAT081014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081014 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3406 nt |
Genomic location |
chr20+:62667490..62671314 |
Exon number |
2 |
Exons |
62667490..62669555,62669975..62671314 |
Genome context |
|
Sequence |
000001 CTTGGAGGAG CCAACTTCAA AAGCCTCCGC CTGGCCTGCC CCTCTGCAGT CCTCCAGGCA GCCTGTCCAG GGAAGCGGTT 000080
000081 GGCTGGTGTT GGACCTGGTG CGGCAGTGCA CACCCTGCCC AAGGACCCCA GGATCATGTG CGTGGCCTGC TGGCGGGAGT 000160 000161 GAGGGAGGGC AAGACCCTGA AAGGCCCATG GTGAGCAGCT GTGGGCCTCC TCTAGGGAGG GGGCTTACTT GGGTGGAGGG 000240 000241 GCTGGGGGTA CACACAGCTC AGGAGACACT GCTTGTTCCC CTGAGCCCCA CCAGGAAATC TCCGGTTGGC TCTGGTCACT 000320 000321 GCGTCCCTGT GGGTGGCACT GGGTGCATGT GCCCTGGCTT CTGGCAGTTG GGGGAGGGGG GCTCCTGGGT GCCGGGCAAC 000400 000401 CCTGTTCTAA GCTGGGCTGA GGCTTGAGCC TGGAAGTGGT ACTAACAGGC CAGTTGGGAC TCCCAGGGCA GCCAGTCTGC 000480 000481 CCCACCTGGG TGGGACACAG CAGGTGCTGG ACATCCTTGC AGCTCCAGCT GGCCTGCTCA GGAGTCAGGC TCTGGTTCTC 000560 000561 GCTATGACCT CTGACCCAGA GCAGGCAGAG GGAATGACGT GGCAATTCTG AGCCCACCAA GTTGGCTGTG GCGTGTGTGG 000640 000641 TTGGGGGGGT CAGGTTTCAG GAAGGGGCCA CAGCAAGCCA TCTGCTCTTC CAGCCATTGC TGCTTTGTGC TCTGAGCAGG 000720 000721 AGCTGCCACC GCCCACCAGG CCCCCAGCTC TATGCAAGGG TTGGGGTGCT GCTTGTTCAG GCTCCCCTGA CAGGGCTAGG 000800 000801 AAGCCGAGTC GAGTCCTCTT ATCTTGGTTG GGTTCGCATG ATTAATTTCC AGCCCTAGAT CTGCTGTCTG ACTCCATCCT 000880 000881 GGGGGCCCAG GGGAAGGGTT GGGGCTGGCC CCTTTTGGGT GGCTGGGAAC CTGGGGGCCG TCAGCTGTCT CCTTGATGTT 000960 000961 TGGGCTTTAT CCCTGCGGGC GCAGGCCCTC CATTTTGGGT CGGGGGAGGC CTGTGGCACA GGCTGCCCGG AGGGATGGCG 001040 001041 TGGGGCGGCT GGTACAGGCA GAGGGGCCTT TTGCGACTGT TGGTTGGGGC TGGATGTGGT GGCTCCTTCC TCCTCTATAG 001120 001121 CTTCTGGGTG TCCCCCTAGC TTTCCCCTTC CAATAGGGTG TGGCTTGGAG CTCTGAGCCC CTGCCCCAGT TGGGTTGGGG 001200 001201 GTACAAGGAG TCCCCAGTTC CCACGTCTCT GTGAGCTAAC CCAGAGGGCG CCAGTATGGG AGGTGTGGAG TTGAATGGGC 001280 001281 ATGGCCATGA GTGAGACAGG CTGTACTGGG ACAACTTCCT ACTGTACCCC CAAGAGCCTG CAGACCAGCC CCACTAGAGC 001360 001361 TGTACGGGGC TGGTGGGGGG CCCTGCTCTG TGCGGTCCTG AGGGTGCTCC ACCCCTTGCT GGCCCCACTC CCACGTGGAC 001440 001441 CACAGAGCCA GGCTCTCCTG ACTCTGGGCC TGCCCCCTCT ATCTCCTGAT GGGTTCTTCA GGACTCAGTG ACATCGCCTC 001520 001521 CCAGCCGACA TCACTCACCC CTTTCACATC TTTGCAGGGA GCATAGAACT GTCTGGTTTG CAGACCTATC TCTTGTGTCT 001600 001601 CCTGATTTAT CCCGCCAGGC CTGTGCCTAC AGCCTTTCTT GATTGGTGAC ACGTCCATTT CATTCGCTCA GAGATCCCGT 001680 001681 GGGGTGGGGC AGGGGGTGGG GCTTCTACGG AAACAAAGTG CAGGTGGGCT GGCTGCTCCC TGTGCTGGGA ACACCCCCCA 001760 001761 GGCCTAACCC CAACCTGCTG TCTCCTCCAG GTACCCCCTA AGCCTGCACT CTGGGCGCTC CTGCTGGCGC TGCTGGGGAC 001840 001841 CGCGCCAAGC CGCGCCTATT CCCCGGCCTG CAGCGTCCCC GACGTGCTCC GCCACTATCG CGCCATCATC TTCGAGGATC 001920 001921 TGCAGGCCGC CGTGAAGTGG GGCGGGGCGG GGGCCGAAAA GACCAGGCCA GGCTCCAGAC ACTTTCATTT CATACAGAAA 002000 002001 AACCTGACTA GACCCGGGAG CTCGGGACGG CGGGGACGGC CTCGGGCCTC CTGTGGCGCC CAGAAGCGGA GCCGGCGGCC 002080 002081 CAAGATGCGC CCTGCCCGGC GTCGCGGCGG CCGAAGGCAG CTCCTGCTGC GCGCCCTGGA CGCCGTCGCC ACCTGCTGGG 002160 002161 AGAAGCTCTT CGCGCTGCGC GCCCCGGCCT CCAGGGACTC CTAGCGCGGC CCGTCCTGGC CCTGCGCGGG GAGGAGAACC 002240 002241 AGCGGGGCCG CGGCAGAGCC TGGAGACGCG CCTCGTTCTG TAGACTTGTT GGTGACCTCG GCCCCTCGCT CGACGCAGCC 002320 002321 CGCGCTCCCC GGAGGGCCCA GGACTTGGAG AAGGGAGCGC GCCTGGCCGC CGCTGGGTCA CGGAGGAGGC CCGCCCTCCA 002400 002401 CGCGCCGAAG GCCTCAATAA ACGGAGCTGG CGCTGCGGGT CCGGCACTCC CTTCGCCTGC CTCTCTGTGG GCCTAGGACC 002480 002481 GCCCCGGGAT CTGCGCCTCG GTGGCGGGGG GCGGTGGAGG GGGAATGCGG AGACCCGCAC TTCCTGTGGC ACCTGGACGG 002560 002561 GGCGGAGCCG CCGCTCCCAG CCTCGGGCAG CAGAGGGCGG ACGCGGGACG CTGGGCGCGC TCCGGCTCTG TCAGCGGCTC 002640 002641 CCGGCTGGGC GGAGGGCAGA GCGGGGGACT CCTGGGGCCC CTAAAACGTC ACGTATCCGT CCTGCTCCAC TTTGGACCGG 002720 002721 GGCCGGGGGT GGAAATTGAG GGGAGGGGAA GGCTGGACTT GGTGAATTCG GAGCAAAACA ACCGGATAAA GGAAACGGGC 002800 002801 CCGAAGGGAA GCGGGAGCTG CGGGCCTTGG CTGTGAGCTT GGCCAGGCTA TTTCCTGCTG CCTCCGGAGG GGTGACCACG 002880 002881 GCCTGGGCTC AGAGACTGCC CAGCCCCCTC TGCAGGACTG GCCAGGCTGG GGCCCGCTTT CTGGCCCCTG GAACCCTCCA 002960 002961 TTTGCTGGGG GACTGTCCCC TGGTTCCCCC ATCTGATGCG CAGGTCTGGG AGTCTGTCAC CCCCCTCCCC CAATCTCGGC 003040 003041 CCATGGAGGA GCAGGGGAGG TAAAGTACCT GACACCTGTT ACCCTCCCCT TCCCGGAAAG GCCGCGAGCA GGCTGTGCCT 003120 003121 CTGGCATTCT GTGGGATCAG GGGCAGCAGC AGAAGAAAGA AGTAACCTCC CAAGCTGACC CTGACCCAGC CCCACACTCT 003200 003201 GTGTTAATGT ATTTAGTCTG TGCAACGGGA GCTACTGTCT CTGTTTTATA GATGGGGAAA CTGAAGCACG AGGAGGCTGA 003280 003281 GACTTGCCCC AAATCACAGC CAGCAATGTA AGAGCTGGCC TCAGACCCAG GCCCAGGGCA TGGGATCTGC CACATGTCCC 003360 003361 CTGCCTGGAG GCTGGGGGCC AAGCTTCCTG GACTTCAGAG CCTTGG |
Predicted Small Protein
Name | NONHSAT081014_smProtein_1274:1510 |
Length | 79 |
Molecular weight | 8311.6862 |
Aromaticity | 0.0641025641026 |
Instability index | 56.7320512821 |
Isoelectric point | 9.60748291016 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.0402755696873 |
Amino acid sequence | MGMAMSETGCTGTTSYCTPKSLQTSPTRAVRGWWGALLCAVLRVLHPLLAPLPRGPQSQA LLTLGLPPLSPDGFFRTQ |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHH HHHLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |