NONHSAT081827
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081827 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2253 nt |
Genomic location |
chr21+:35269911..35272163 |
Exon number |
1 |
Exons |
35269911..35272163 |
Genome context |
|
Sequence |
000001 AATGTATATA TGGTATGTAA GAGGCCATGC TGTTAAATGT TGCATAAACT AACGCAGATT CTGTAGTCAA AAATATTTAA 000080
000081 CTTGTTATTG TAAAATGTGA TTTGTCATTG AGAGATTATT TTTCTGTATG TATATGAGAG TATTTTAGGA ATCTAATTTA 000160 000161 AGTGCATAAA ACTATAGAAA AAAATTTAAA ACCTATTCCA AGAGTAGAAA ATGCTTAATG AGATTACTTG GGTTCAACTC 000240 000241 AACTAAATTT CTTATATTAA AAAAAAATTC CAAGTTGTAT ATGTTAGAAA TCAAAGGAGT CATTTTTTTT CCTGCAGGAA 000320 000321 ATATGATAAA TTTCAGTGTA ATGGATGGTG GCGTGATCAA ATGAAAAGTA TCCTGTAGCT ATGACCTCGC ATGGGACCTT 000400 000401 GGTGTTGCAT TAAAAATGGA TTTTTGCAGA TCACATATCT GAGAGGGTAC TTGTGTCAGG AAGGATGAGA GGATAGGGAG 000480 000481 CCTGTTTTTC ATCAGATCCA TGTGCCACGC AGGCTTCCTT GGGTTCTAGT GGATTTGTTA GGGATCTGGG GCTGACGCAG 000560 000561 CTATCCCACT AGAGAGGCCA CTCTCTGACT TCCAGGTCGC CCTTTCTACT TCTGTATCTG GATTGATTCA GTTTATCCCT 000640 000641 AATTAGCGTT TGCGTTTTCC ATGAAATTTC CTGATGCATC CTCACTGTCT TCAACTGTTG CATAGCCAGG TGGGTGGATG 000720 000721 GATGGTTTAG GGTTTCTGAG TTAAGCCGTT TTGGGGCAGG CTTCTGGATG CCCATGTTTC CATGGAGACC CCAGGGGGAA 000800 000801 GATGCCTTCC TCCCGTCTGC ATTCCCAGAA AAGGATCAGA AGTCCAGGCT GCTTCTGGGG CACAGACTTT CTGTACTTGG 000880 000881 CCACCAGAAG TGCCCCTTAG GCCACCTAAG GAGGATTCTG TGAAACTCAA TGTCTAAACC CCTGAGAAAG GCATTCAGAA 000960 000961 ATGATTTCAG GAGGGGGCAA CCCCAGGAGT CCAGCCTCCC CTGGCAGCCT GGAAATACTG CAGTAACAAA AAGAGCTGGT 001040 001041 TTCTGGTGAT CTGAATGCAT TGTGTTTGGG GGTGACACCG CTGGTGGAAG GTTGAGGGCC TGTGGTCTGA AAAGACATCT 001120 001121 GAAGAATGTG TTAGGTTTTC AACATTTCTT TGAACAGGCT GCGTGCATCT TAATGCTGTC AACCAGCAAC TGGAGCCCCT 001200 001201 TTTTTGAGAG GCCCGAACCA GTAAAGCTGC TGACTTCAGG AGTATGGGAA GCTGTGATTT CTGGAAGCTT TCTGGAATCT 001280 001281 ATTTAGGTGT ATGAATAATC TGCAAATCAC TTAGAGGCAC TGTCCATGTG GTCCATAACT GGCTTTATTC CCAAAGATGG 001360 001361 AGCTGTTCAG AGATTTCTTT GTTCAGGCGC AGCCTTGGAA GGCCACCTAA GGCCTGCCAG CAGAGGAGAT GAGCTCTGGT 001440 001441 CTACCAACCC CAAACAGGCC CTGACTCTCC TTCCTTAGAA CGATGCCCTC TGGCTGGGGT GGCAAGAGGG CTGTGAGTGG 001520 001521 AAACAAGTCA GCCAGTCAAC TGTCCCTTGG GCCTTGGTTG TTTCAAAAAA GTCTGGGGAC AAGAAAAGCT AGAACATGGG 001600 001601 GCCCTCCCTT CCCAGGAGTG CTAGCGAACC CTCCCAGATA GCCTTTGCCT GTTTGGAAAA GAATGTAATC CATCAGAACG 001680 001681 TGAGCTCCTT GTGCTTCCAG TGACAAGCGG GCCACAGTGC TGGTGGCATG TTGCTTCCCT CACAGCCCTG CCCAGGGGTA 001760 001761 GGACCAGGCC CGCCCCTTGA TGGATGTGCT GTTGATTGTA ATATACTTCT GTTGCCAAAT AATGGCACTG TTTAATTTTC 001840 001841 CATAAAAGAG AGACTATATT GTCTGATATG TAATGTTAAT GGAATTCTAA GAATTACTAG ACACTATTAT AAATTGTAGA 001920 001921 CTTACGTATT TGTCTAAAGG TTTGATGAAG CAGGGCCAAA ACATTGTTTC TTCTTTTTTG TTTGAAAGAA GCTGAGGTTT 002000 002001 GTTTTTGCTG TTTGAGTGTT CCTTTGGCAA CTTATTATGT GTGAAATGTT AAATTTTACC GATTAAGATG ATGGTAACTG 002080 002081 AGACCTTTCT TTAAACCAGT AGCAACATCA GTACAAATTG CTCTTCCTGT GTATCTTGAA CCTAAAAAGA ACAATCTCTT 002160 002161 CAAAAACAAA AACAAAAACA AAAAACAACT CTTTGGTCAT TTTGACCTGT GTGGTTTAAA TTCAAATAGT TCATGAATAA 002240 002241 AAGGAGAAAA GCC |
Predicted Small Protein
Name | NONHSAT081827_smProtein_767:922 |
Length | 52 |
Molecular weight | 5905.9263 |
Aromaticity | 0.078431372549 |
Instability index | 71.0784313725 |
Isoelectric point | 10.2744750977 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0376258611552 |
Amino acid sequence | MPMFPWRPQGEDAFLPSAFPEKDQKSRLLLGHRLSVLGHQKCPLGHLRRIL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLEELLLLLLLHHHHHHLL |
PRMN | - |
PiMo | - |