NONHSAT082255
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT082255 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3202 nt |
Genomic location |
chr21+:42798197..42801848 |
Exon number |
2 |
Exons |
42798197..42799231,42799682..42801848 |
Genome context |
|
Sequence |
000001 GTCGCTTCTG GGGGCAGCGC CCAGTAACCG CGCTAGGAGC GCGGAGAAGG GCATTGGGAG AGCGGCGTTC GTGGCGGAGA 000080
000081 CTAGCGCTCC GGAGCACGGG CACGACGGGG GCACCTTCTC GGCTGCTAGT AACTAACAAT AATAATAATC ATAATCATAG 000160 000161 CAAGGGCGCT GATGGGCGGG CTCGGAGCAC GCCTGATTCT GGTTCCCACC AGGCTGCCCA GGCTCCTGAT GACGCATCAG 000240 000241 AAACATCCCC CTAACCCGCG GCCTTCCTGC AGGAGAGGTT GGGAAGGGGT GGGGGACGGG GCTCGGGGGA GGTCTCCGAG 000320 000321 GGACTCTAGT AAGCGGGGAA GGGCGCCGGG AAAGTTTCAG ATCCACGGCT GCGCGGGCCA CGAGCCCACC CGAACGCCGA 000400 000401 CCACTGCTTT CCGTCGACTT CTATTTCCTG GGAACGCGCG AAAGCAAACC CAAGTCAGAC TGCGGAGGTC GCTGGGGAGG 000480 000481 GAAGGTTCAA GGAGTTCTCG CCGATCCTGC TGAATAAAGG GGGTTCCGAG CTGGGCCGAG ATGGGGCATG CGCGGGAAGA 000560 000561 CCCCTGCCCG CTGTTCCCCC CCACCGCCCC AGTGGATGCC ATGCCTGGGG CCTCCCCGGC GCGTGGGGCT GACGCACCCT 000640 000641 CGGGGTCCAT CGTAGTTGGC CGGGATCGTG GAGTGGGTGC GGTGGACGAA GGGAGGCAGG ACAGTCCCGG GGGTGGCAGA 000720 000721 AGGAGCCCGG GCACAGCTGA GACCTGCGCT CCCATCCCAC CAACACTCAC AGCAGGTGCT GCCGAGCTGG GCAATTGGGA 000800 000801 TGGCCCAAGT TATTTGGTTA AATTTTAAAT CACGTTTGTT ACTGGGAAGT AGAGTCCAGT GATGCTAACC GCGCCTCTAC 000880 000881 CTCCACCACC GGTGTCAGTC CCAAAGGGCT CCTAAAATGG CTGTGTCATC TTTCAGCCTT GGACCGCAGT TGCCGGCCAG 000960 000961 GAATCCCAGT GTCACGGTGG ACACGCCTCC CTCGCGCCCT TGCCGCCCAC CTGCTCACCC AGCTCAGGGG CTTTGGAATT 001040 001041 CTGTGGCCAC ACTGCGAGGA GATCGGTTCT GGGTCGGAGG CTACAGGAAG ACTCCCACTC CCTGAAATCT GGAGTGAAGA 001120 001121 ACGCCGCCAT CCAGCCACCA TTCCAAGGTA AGGCAGAAAT GAAGTGGGCC GTTGGGttct ttcttttctt tctttctttt 001200 001201 ttttgagaca aggtctcact ctgtcgccca ggctggagtg cagtggcgcc atctcagctc actgcaaccc ccgcctccca 001280 001281 ggttcaagcg attctggtgc ctcagtctcc tgagtagctg ggattacagg cacacatcac cacacctggc taatttgtat 001360 001361 gtgtttagta gagacagcat ttcaccatat tggccaggct ggtttcaaac tcctggcctc aaatgatcca cccgccttgg 001440 001441 cttcccaaag tactgggatt acaggcacga gccactgcac ccagtcAGGT TCATTTTAGT TGTTATGTTA ACCAGGTTTC 001520 001521 CTGCACCTGT GCGCTAACTT TCACTTTCCC AAAAGGTTTC AGGGTGACCC AGCAGGCAAT GAGTGATTCT CAAATTCAGG 001600 001601 ATTTATTGTG AGAGATTCAC ACACACAATT GAGCAGACAT TCACAGTACA ATGATTAAAG GGAGTGATAG GGTAAGGACC 001680 001681 CACAGTGGAG GCTCTGGAGG CCAGCCCACT GACAGCCACT CCAGGGAGTC CAGAAGTCCC GCTCTAGTGC TGGGTGGTGG 001760 001761 AGGGAAATCT GTTCCTCCAG GGACCTCGTC CTCGGCTGCC CAGCTGCCAA AGTCAGGAAT AAGCTTTCAG AAATCTCACT 001840 001841 GCCAAGATTC CGAAAACGCT TCAGACATTG CTAGTCCCTT GTCGCTTTTG CGATCCTCCA CAGGTGTGCG TGCCACTGGG 001920 001921 TCCTTATTCA CTGGGGTCTC TGGTGGCATT GGGCCACAGC AAGTGTTCCC TCATCCCCTT AGTCTACCAC ACACATGCTT 002000 002001 ACCACTTTGA AGAAAAACCC CTTTACTATG AGCGAAAGTG AGAAACACGT ATGTTTATTG TTTCTAAAGA AAGAAACTTA 002080 002081 ATATGGGCTT AATGCTACCT AGTGAGTGCC TCCATTTTGA GACATTAGGG TCACAAGTCA TTATTATATA TCATGGGCAC 002160 002161 AAACCTGCCC TGGGCAGGGA CGGAAGGAAG CCCCTGCACA GGGGCAGTTG CTCAGGATGT GAGAAGAGCC TGGTGCATAA 002240 002241 CCCCATCCAT GCCCACCTAA CATCTCAGGC TCTGACCAGT GGGGCTGTGC AGTAGCGAGT GGATGGAGGG CTGGAACCCT 002320 002321 GCAGCCTCCT CTCCAAACAC AGGGTGCAGC CAAGACATTT TAGGAGCAAT TTGGGATGGA GAGCTAGGAG TCGCCACCTC 002400 002401 TTGGCTCTTC CAAGGCCGGA ACTGGTGCCT GCACTCAGTT CAGTTTGAAG ACTGCAGCTG GATGCCAAGT TCCATGGAGG 002480 002481 AGTAAGAAAC CGGTTTGAAC TCCCGAGATT GCCCTGCCCC TGAAATCCAA ACTGATGTTC CGAATGATCA GGGAAAGGTA 002560 002561 CAAACGTTTA TGGTTTACAG ACAAAACCCA TAAGGTTTAG CTTTCAGAGA ATCTCATTTT ATGAAGCAAA TTAGGGAAGG 002640 002641 GAATCTACTC ACCAAGTCCT GTTTCAGCTG ATTGAGTGGA ACCTGTGGTC ATGTGGTACA AGTCCTGGTC TCAATGATGC 002720 002721 TCCTTATCTG GCTGCAGAAA GGCCAACTGA GGCAACCATA GCCCAGAAGA CTGGTACTCC TGAGAGGCAG ATGAAGTGGT 002800 002801 GGTCTTTGAT ATCGAGCCTG GGATGccctg ggcacatgag gtatttccaa aggcatggga gttttaggga ataaattccc 002880 002881 agattgtcag actccataag taccgtttAC AATGGATTAc cttttataac catcccaatc ctacctgaca aaagaggtgg 002960 002961 gcagattacg aggtcaggaa attgagacca tcctggctaa cactgtgaga ccccatctct actaaataaa tacaaaaaat 003040 003041 tagccgggtc tggtggcgtg cacctgtagt cccagctact tgggagcctg aggcaggata atcgcttgaa cccgggaggt 003120 003121 ggaggttgca gtgagccaag attgcgccac tgctctccag cctggtgaca aagcgagact gtctcaaaaa aaaaaaaaaa 003200 003201 aa |
Predicted Small Protein
Name | NONHSAT082255_smProtein_1358:1498 |
Length | 47 |
Molecular weight | 4720.2366 |
Aromaticity | 0.0652173913043 |
Instability index | 48.1391304348 |
Isoelectric point | 6.20745849609 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0100541718189 |
Amino acid sequence | MCLVETAFHHIGQAGFKLLASNDPPALASQSTGITGTSHCTQSGSF |
Secondary structure | LEEEHHHHHHHHHHLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |