NONHSAT084519

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT084519

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

9091 nt

Genomic location

chr22+:27053277..27072436

Exon number

5

Exons

27053277..27053318,27059280..27059362,27061421..27062900,27064121..27064365,27065196..27072436

Genome context

Sequence
000001 ACCGGTTGCA CCCCGCTTTC CTGGCCAGGA CTCTgggcgc ggTTGGAGGC ATCTGTCCAC CCATGTGGTT CCAGACACGT 000080
000081 TCATGTGGCC ACCATGACCC CGTCGGCATC ACAGGGGTAA CCAAGGTCCA CAGAACGAGG GGAAAGGGTC ACTGTGGATC 000160
000161 AAGCCAGGCT CCTCTGAGCA GTCCAGGGTC TATTTACAGA GAGCAGCAAG TTCCTGGGAC AGAGGAGACA GAAGGGAATT 000240
000241 TCCAGGTTCT TCAGGACGTT CACAACCACA CTGAGAAGCA TCTTTGCAGA TAAGTATTTA AACTTACCAG CCCATAGCCT 000320
000321 ACCAGCCTGC CCTCTTCTGG TCTGTGCAGG AAAGTGTAGT ATCCTAGAAT GCCAAAGTGG GAGGGGAAAT GGGTGATGTA 000400
000401 GCTCATTCTC TTTTCTACCT CTATGGAAGA AAGAAAGAGC CTGTCCCCAT TTTGTGGGGT CCCAGAAAGG GTGATTTTCA 000480
000481 CACTTCACAT TTGGCGTTAG GGCTAGTATT TCACAAACAT TACCGTCTGG AACTTTTGAA GGCTGAGTTA AATGACTTCA 000560
000561 TCTTGTGTAC TTGTAGAACT GCTATTAGAA GGAGGCTGGG GACTCCCTGA TGATGTGAAC CAGCCCTTCT CTTCTCAGTT 000640
000641 TCAGCACTTT GTGATCATAT TTATAAACCT TGGACAGGGC TCCTTGGCCT TAGAGTTAAG TGAAGAGTTA ACACTGTGAC 000720
000721 TTTAGATGCA TTTTTCTCAG TGTAAGTGTC TGAGCTCATC TCCAGTTCTG GACTCGTGCC CCCACTCCCG GGTGCTGACA 000800
000801 GCAAGCTCTG AAGATATGCT GAGAGAGCTC CCTGACTCTC CTGACTCAGG TCTGCCAGTT GATGAAGACA GCACAGTTGT 000880
000881 TACCAAAAAC AAAACCTGGC AGATGGTCCT AGGTCAGGAT TAGTGGTCAT TCTCTGGTCT TCTCCAGACT GGTGACACAG 000960
000961 GGTGGTCTTA AAAGAGTCCT AGTCCAGCCT CTGGCTCCCC GAATTTCCTC TGGTGCATGG GGCATCAGGA AAGGGCAGGG 001040
001041 GAGAAGGAGG GGGAGCAGAA AAATAACTGA GGCTGGGCAG AAGGGTCCCT TCCATTTCCC ATCCATTGCT TCAAACAATG 001120
001121 GGTGATTACC GTGCACCTTG AGTGAATGTC AAGGCAGGAA GGGTTccagg gccacccagt gtggcaggag cagagctggg 001200
001201 atcagaattc tggattcctg actctccgtt cagctgctat tcagctatca ccaagctgcT GAGTTTGTCC TACTTTCTCC 001280
001281 TGGGTCACAT TCTGCTGTTG TTGGGAAACA GGGAGTGAGT GAAGGGAACC TGGGAACCCT TCTCCCCTCA CCTTTTAAGG 001360
001361 ATGTTCTGGG GTGGAATAAA GAGAGGTGGA GGGTGGGGTG CCTGGCCCAG CCTCCCTGGC TCCTGGTCCT TCTTTCTTCA 001440
001441 GCAGGGAGTT CTGGCAAGGC CTGGGCCTGG GGAGGGGGCC TGGGTGCAGT TTTCTCCTGC GGTGTGGTTG GCTCTTTTGT 001520
001521 CTTCCAGGAT GGGCCTGTGG GGTCTGTGTG GGGAAGGAAG GAGCTGGGAG CCTGGGCTGC CTGTGTGTCG GCTGGATGCT 001600
001601 GCCAGGTGGC TCCATCTGGG CCGCATCTCC AGGACTCCTG GCCTGGACTT CTCTTTGGAC CTCGGGTGAC CTTGGATTCT 001680
001681 GGCCACAGTG ACTTAGCGGT CAGACTCCGG TGGTTTTCTA GCCCGCTGGG TGACTCCCTG AAGATCTCAT CCTCTTCACA 001760
001761 CCTGTTGGGA TGGAGCCTCC CATGGATAGG AACTCTTCCT GGTTGATGCT CAGCAGATGA CTGATCTGGC TCTGGAGGAC 001840
001841 AGCTCCAGGG AATGCGGAGT GGTGTGTACt attcatcagc ttgggctgcc acagcaccat gccagactgg atggcttaaa 001920
001921 catcaggaat ttattttctg ccagttctgg aggctggaaa gtccagatca aggtgttaag acttggtttc tggtgaggcc 002000
002001 tctctccttg gcttgcaggt ggcaccttct cactatgtcc tcacatggcc ttttctctgt ggagagggac agagagcatg 002080
002081 agcaggctct ggtgtctcct cctcttctta taaagacact aatatcacca tattagggct taaacctatg acctcattta 002160
002161 accttaaccc cttaaaggtc ccatctccaa aaacagtcac atagcaggct actgcttcaa catatgcatt tgggggaggg 002240
002241 gacaccattc agttcttaac aGGGTGGTCA CCGCAAACAT GGAAAGTCAG AGCCTTCTCC CCTTCAGAAT TCCCGCCCCC 002320
002321 ACCCAGGGAT GGGGAGGAGG AGCAGAGAGG TATGGGAAGC AGACACGGAG AGTGGCAGGT ACCATGCTGG GGTGGCTCAG 002400
002401 GAGTGCTTCG GAGGACATAT GGAACTGGCA GGGCTCAGTG CAGGGAGGCG GAGGCCCTGG GAGAGCCGTG TCCTGAGAAG 002480
002481 GGCCTGGGCT ACAaccctgg gcaagttact tcacctctga gcctccgatg ctctgtgaaa tggaaggaat gtgcttgcct 002560
002561 gtcaggtgca gggagaattc agtgagattg tgtgcctagc acagtgcctg actcccagta ggtgctcagc aaatgCTCCC 002640
002641 ATCCATCTGG GAGTATAGAC TTAGGGTTTA TCTATTTTTT TTTTTTTTTG GCTCTCTGGA CTTTAAAACT CAGCATCTTC 002720
002721 TGAACCAGAG GCATTTCTGA TTAGCCCTTC CCTACCTATT TTCCTAGTAT CACTCTTTAA TCAGCTTGGG GAGGTGGCAG 002800
002801 CATTTCATGG CCTCCGTAGT AACTCACAAT GCTTCCTGGG GTATTTAAAT TCTACTCTCT CATCAGCact gagcacctac 002880
002881 tttgggccct ttcccgtgct agccatttgg gggaaatata ggtgaaGAGT GGCTGGGGTT TGAACCTTTA GGATTTCACA 002960
002961 GCCATGCTGG ATGGGATAAA ACCAGCTCAC ATGGAGAATC AGAGAATGGG ACAGTGCCAC AAAACAGTCT ACTGAGGCAC 003040
003041 AAGTTCTGAG TGCCTGGGAA GTGGTAGAGA GACCCCAGAG AGGGCTGCTG CAGTCTGGAA CAGCTTCCTA GCAAGCTGTA 003120
003121 CCAAACAGGG CCTTGAAGGA TGAGAAAGAT CTGGCTGAGA TGATACCCGA CCCTCTAGGG AAATTCTTAA AGTAACTTCT 003200
003201 AGGAAATGTC ATTGCTCCTT aaaaaaaaaa aaaaaaaaaa aaaaGCAGGT TCTAATTCAA ATTCCGCTGC ACTACTGAAG 003280
003281 tagtgcagga cttatcagaa cctttaaaat gctaatggca atttcaaata ctcagggaca gggcatagga tgaagtgttc 003360
003361 cttgactttt atggccgtag aatctttttc tcatggaaca tcGTTTAGAA CTGTGGGAGA TGCTAGGCTG GGGTTTCTAT 003440
003441 GGGAAAAGTA CAGCAGTGAT AGAAGATGGC ATAATTAGGG TACACTTAGG TGCTTTGTAG CATTGGCTGA AAAGGAAGCA 003520
003521 GACCGGGTGG GCGTGGGGGA GTCTCAACTT GGTTCCAGGA GCCAGGCCAG CTTGATGCGT TTTTTTTTTT TCTAATGGTG 003600
003601 GGAGGGCAGG CCAATAGTTG GAGAAACTAG AGGCCTGACA GTCGGTGATG GAAGAGATGT CTACTAAGCA CGGTTGTCAG 003680
003681 ATCTTTTGCG GAGAGATGCG GGTGTGCGTG TGTCTGTCAG AGTGTAACAG GATCCAGCCC TCTGGGAAGG GGCTGACCAG 003760
003761 AACCAGGCAG GGGGTTTCTG TCTAGGACAA GTAGGGTCCA TTTTCAGGGG AGCTGAAATA TTTGCAGGGG GTGCTCTGAG 003840
003841 ACCCACAGCC AATAAATAGG GAAGCAACAT GCTTTTGGGC AGGGTCCATG TGGTTAGGGT TGATTTTGAT GGGGCTGGGG 003920
003921 GGCTTAGAGT TAGACCCCCT GCCCTGGTCA GGCCCCACTC CCTGGCTGGT GGGGGCGGGA GGCCTCTGAA GCTGCAGCTG 004000
004001 GAGGGGCCGG GGCAGTGTTG CATGGTGTGA TTAACCTACT AACCCAGGGC TCAGCCGGGA CGCTGTGGCG TGTGACGAGG 004080
004081 TGCCTGGCCT TCTGCCAACC AACTAACCCA CTAACCAGGC CCGAGCATGC CCTACTAACC ACCCCCCCGC AGCCAGATCC 004160
004161 TACTAACTGT GCAGCTCATG GGCCTTTCAA GGGGCTGGGA TATGGGGGCA GCCAAGGCTC CAGAAGGCTC TGCCTATGGG 004240
004241 CTGGGATCTT TGTGCAGACC CACGTTCCAG GACAGAGAAT GCAAATAAGA CTCACCAAct ctgccacttc ctgttgagtg 004320
004321 agtttgagta agtcacctca cttctctcaa cctcagtttc ctcagtggta gaatgcgagt tctgatacct tacaggttgc 004400
004401 agtgaggatt CCCGTCAATA TAAGGGTCTC AGCACATGGC AGACACCTAA AAAAAAAAAA AGTATGAGGA TGGAGGAAGG 004480
004481 CCCCTCAAAC CTGGTTGAAC ACGTCTGCTG CCTAGGCCCT GGCCTCTCTG GGTGTTCTGC ACACAGATCC TTCTGCCTGG 004560
004561 GGCAAGACAC TTGGCTTTGA ATCCATGTCA CTTCCCCACA TTCTTCCTCC GTCTCAGCTT TCTTTTCTGT AGGCAGCTCT 004640
004641 TTTGTTCGAT TACTAACCCG TCTAACCCCT GGGGTGCCTC AACTGCACCC CGATCATCCC TTAACAAACT AACGGACCTG 004720
004721 CGTGCGTTCT TCCTTTTCTC TTAGCGACTC CTGTGTGTGT CTGCTGAGGT GCCCTGTCCG CTGGTGCTGT GCTCTGACTT 004800
004801 ACTAACCCAG CCCCTACTAA CCCTGTTTTC TCTTCTTACT AACCCCAGCC CTGCCGAGCT CTGGGCTCCC CCCGGGGGCT 004880
004881 GGTCCCCCTC CTTTTGGCAA GCAGATGACC TGGGGCTACT GGCCCTGTAG ACAGATGTCC CACTTTGCTG CCCCATATTG 004960
004961 GCTGTAAGAT CAGAGTCCAC TGGGCCAGGT CTAAGGCAGG GGATGGCCCT ATTAACAAGA CTCAGAGGAG GAAGAGGTGG 005040
005041 TCCTGTGGAT GTGGGAGGCT GGACTCTGAG TATGACATCT CTCCTATGTG CAGAAGTCTG GTTGCCACTG GGAGTAGGTG 005120
005121 GGACCAGGGA AATCTCTGGG ACGTGAGTGT GGAGGCCTGT TGGTCTAGAC TCTAGACTGT GGAGCTCTGA GCTTTTGTGT 005200
005201 CCTCTGGAAG GAAGCTGGGG AAGAATCCTC TCCATTGTTA AGTGACGGGG ATAGAAGCTG TCCTGCACAG GAAGTCACGA 005280
005281 GGGGGGCGTA TCCCACGAGG AAGGCAGGAG GGGGCGTGCC CCTCACCGGA AATTAGCAGA GGGGCGTGTC CCACACCGGA 005360
005361 AGTCAGAAAG CGGAGCCTTT CTTACACCGG AAGTCAATGA AGCGGGTCTT TCCTACGCTA AAAACCACTG AGTGGAGTAT 005440
005441 TTAGTACACA GGAAGTCGGC CAGAGAAACA TTTCTCATAT TTGAAGGCCG GAAAGAGGGA CATTTCTGAC ACCGGAAGTC 005520
005521 AGTGAGAGGA CTCTTTCCCA CACAGGAAGT CAGCTAGAGA GCCGTCTCCC CTCTCTGGAG CCGAGAGAGG CCGGTTTCCC 005600
005601 CCACCGTAAG TAGACGTGGG GCCGTGACCG GAAGTCCTTG GGAAAGATCC GTCCCATTCC CGGAAGCTAG AGGGCGTTAG 005680
005681 TTGTCGGGTT GAAAAGGGGT GTGGGGAGGG GAAGCAGCTT TACCCCGGGC TCGGAGTTTG CAGGAGAGAG AAGTGGGGAG 005760
005761 CAAGAAGTGA ACCTCAGGGG CTCACAGGGT TCCCGCAGAT GCTCAGGCCG GCCAGGAATG CATCTCTGGC TCTCTGTTCC 005840
005841 CACGGACGTC ACTGCCTCAG CCAGCCTCCC CCAGAGCCCG CCAGCCGCTA AGCCGGGGCC ACACCTGGGG GTGATTTCAT 005920
005921 GCCTCACCTC CAGTAGGCAC CTTGGTTTCT TTGGGCTAAT CTCTGGCTCC CTTGCGCTAA CTCTTGCTCT CACCCAGCTA 006000
006001 ATCCCTGCCT CACCCTGACT GCCCCAGGGG CTGACCACTA ACAACCAACC TGGCCCTGTC TGGGGGTTCC AGGCTCCTGG 006080
006081 CCTGGCCCTG ACCGGTTCTT AATTAACCTT TCCTTCACCT TGACTAACTC CTGCCTTCCT GGTCTGTTCC TTTCAGCAGA 006160
006161 AACTAATGGT TTGTGGATTT TTTTCTGACT AACAACAGGT CTAACATTCC TCGTTACTGT TAACAGCTTG GATGTCGGCA 006240
006241 TGGCTGGGAA GGGGCTAACA CAGCTTTGAA CTTGGCTAAC ACAGGTTTGA ACTTGGCTAA CACAGGTTTG AACTTGACTA 006320
006321 ACACAGGGAA AAGCATAGCT AACAATTTTG GGCGTGGTGG CTGCTCTGAG TCAGAACAAT CAGAAGTCGG TAAAGATGGT 006400
006401 AGTTTTCTAA AGGAGGTGCC AGGGCTCTGG TGTGGACCAG GCCTGATGGA GCAGTGGTAC CCACCAAGGT GGGGTCAGAA 006480
006481 GTATAGCCAG TCTTGCAAGG TTTTGGCCAT TGGGCATATC TTCACTCCTC ATAGTCTGCA TTTGGTTTCA GTTCTTAAAA 006560
006561 AAATATAGCC TTATAGCTAC AGTAGTTTGC ACAAGTAGAT GCAGCTCTTA TAAACCTTAA AATACCTGTC TGGTGTCTAC 006640
006641 AGAGCATATG CCATTTTGTA TAGAGTCACC CTTCCCCAGG CCAGGGCCTA GAGTCTTCAT TTTGGGGACT TTGTGTTTTG 006720
006721 GAAGTTCTAG GACATAAAGC TTTAGATCAG AGTATTCAGA AGGGTTATAA CTCCGTCAGT CATTTACATG TTAGTAGTAT 006800
006801 AAATTATCTG AGCTTCCTGT TCTAACTTTT AGCTCTTCTA GCATAAACTC TTCTGTGCAA TTTAGCTGCA CCGAGGAAAC 006880
006881 GGGAGTTTTT CTGGAAGGGA CTTTTGATCT CTTTAGACTG AGGGAACGTC CTTTGGGAGT AGAGGGGCAG GGAGCATACG 006960
006961 CAAGGGATTC CAGGTGCAGG TAAAAGGTGG CACTAGTTCA AGGTTTTGCT GACTCAGTCT GGTAGTCAGA GTCTGCAGGA 007040
007041 GAAGACAGTT CAAGGCAGGG CCTGGAGGAT TGGATCAGTT TAGGGACAGG TCAAAGGCTG GCTTACAGAC CTTAGAGGCA 007120
007121 GGTTGCTTGG GTCGTTGAAT GCTAGTCTGG TGCTGAGAGC CCTTTTCTCT GGCAACTGTG GACTCAGAGC TAACCAATTG 007200
007201 TAGTTGGCAG TGGGGGTGAA GGGTGATCCA GAGGCCTGAG CTGCAGAGGG CACAAGAGAG AAAAGATGTC TTAGAAAGAG 007280
007281 CTTTGAGAAC ATGCCTTGGC TGCTGGCAGG GACCTTGGAT GGGGTAGTCT ACACCCGGAA GTGCCTGCCT GCCATCCTCT 007360
007361 AGTGGCTGCC TTGCTCCATT TCACTCAAAG CAGGAAGCTC ACACCTCCTA TTCCTGAAAC TCCTCTTTGT TTAACTGCAA 007440
007441 AGACTTGATG Ctgctaagga tctactatgt gccaggcact gctctgggcg ctgggacctg cacctgggct ttttcgtcat 007520
007521 ggtgctttta tagcctagtg ggagagttgg tgaagtagat agtgattcag tgagatgggt gttatgattg gtcaggggtc 007600
007601 tgtgggagCA CCAAGGAGAC AGACaagatt gatgtgcacc tactctgtgc caggcgtgtg ccaggcattg gggatgtagt 007680
007681 ggtagttaaa caccatttgg tcttcaggag ctttaattct agtgtgttgg gtgcaggggg gtggaatggg gacagagaga 007760
007761 cacctaatcc accctgtggt ggctttctgg agagggaggc atctaagctg agctgtggct gggtggagtg tgggtgggga 007840
007841 tgagttccgg gcagcgagaG TGGTGGACAC CAGTTTCTGG GGATCAGAGA GGATCCAAAG AGGTTCTGGA AGGTTCATGT 007920
007921 GGAATGTAGC AAGAGATAGG AGACATGGAC ATGGTGCCGG GTCTGGTTGC CAAGAAGTTT AGATTTTATC CTTAGGCCTT 008000
008001 GGGGAGCGAC GGATATGATC TGAGAAAGGG AGTTAGTGGA TTTGAGTTTT AGGCTGGCCA TTTGGCTTTT CCAGCCCAGG 008080
008081 TGGAACTCAG AGGAGTTTGC AATGGCCTCT GGCCACATTT TAGACAACTG AGCAGAACTT TTTGAAACTA GGAAGACCCT 008160
008161 TTGGTCCATC TTTTGATAAA CAGAATCCAT ACATGTCTAC CCCAGTTGGA AGTATCTCTG CAATGACTGg aaagtaaaga 008240
008241 ggaccaaggt gaaaataaag gctcggaagg ggagcaatct tgaaaacatg tcatcccatg gtggtgggaa gtccctggag 008320
008321 aagatcaggg gaaacacagt cataggctgc aagtctataa gataattcca ttggggaggg agcccatttg tcatgcatgg 008400
008401 ctgcaagggg cagatacaag tgtggagtaa gcttGCAAGA GCTGATCCTG GTCCCAGAGA GGGAAAAATA TGCCTTGGTG 008480
008481 GGTAATGAAC CTTTTGTTCC CAGAGGCAGA AGGATTGGGA CTAGGCCAAC ATAGAGATTG GCGATGGTTG TGAGATTCTA 008560
008561 AGAGTGTGTG TGCATCTTGA CAATATTAGA GGAGGCTGAG CCCAAGCAGG CACATTCTCT TCGACCCCTC CCTCATTCAG 008640
008641 TCTGCTTTGG AGTCTACTGA ACATCAAGCT TGCTATGAGC AGGATCTTAG AGCTGAGGAA TTGGCCTCCC AATCCGAACA 008720
008721 GGTGTTATAA TCCTTTCTTA ATAGGTTGTG CTGTGGACCC AATGTGAGGG CTGTGCTGGT GTAAATGGTG ACATGTTGAG 008800
008801 CTGGGGGGAT GCTTTCGGGG TGGGGGGACT GGTTCCATTC CATCAAAGGC CCTCTTGAGA GTCTATCCAG GGACCCATTG 008880
008881 TTTTACTTTA ACAGACCAGA AAAGATGTTT GTTTTCCATG TCATTACCCC CAGGGGATAC CGAATGTGTG GGTAGAAATT 008960
008961 TCTCTGTAGA TTAAAAATCA GATTTTTACA TGGATTCAAC AAAGGAGCGT CACTTGGATT TTTGTTTTCA TCCATGAATG 009040
009041 TAGCTGCTTC TGTGTAAAAT GCCATTTTGC TATTAAAAAT CAATTCACGC T
[back to top]

Predicted Small Protein

Name NONHSAT084519_smProtein_2351:2584
Length 78
Molecular weight 8266.3394
Aromaticity 0.0649350649351
Instability index 41.4077922078
Isoelectric point 8.89630126953
Runs 13
Runs residual 0.0327498588368
Runs probability 0.0490671667143
Amino acid sequence MGSRHGEWQVPCWGGSGVLRRTYGTGRAQCREAEALGEPCPEKGLGYNPGQVTSPLSLRC
SVKWKECACLSGAGRIQ
Secondary structure LLLLLLLEEEELLLLLEEEEELLLLLLHHHHHHHHLLLLLLLLLLLLLLLEELLLLEEEE
EEEEEEEEEELLLLEEL
PRMN -
PiMo -