NONHSAT084519
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084519 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
9091 nt |
Genomic location |
chr22+:27053277..27072436 |
Exon number |
5 |
Exons |
27053277..27053318,27059280..27059362,27061421..27062900,27064121..27064365,27065196..27072436 |
Genome context |
|
Sequence |
000001 ACCGGTTGCA CCCCGCTTTC CTGGCCAGGA CTCTgggcgc ggTTGGAGGC ATCTGTCCAC CCATGTGGTT CCAGACACGT 000080
000081 TCATGTGGCC ACCATGACCC CGTCGGCATC ACAGGGGTAA CCAAGGTCCA CAGAACGAGG GGAAAGGGTC ACTGTGGATC 000160 000161 AAGCCAGGCT CCTCTGAGCA GTCCAGGGTC TATTTACAGA GAGCAGCAAG TTCCTGGGAC AGAGGAGACA GAAGGGAATT 000240 000241 TCCAGGTTCT TCAGGACGTT CACAACCACA CTGAGAAGCA TCTTTGCAGA TAAGTATTTA AACTTACCAG CCCATAGCCT 000320 000321 ACCAGCCTGC CCTCTTCTGG TCTGTGCAGG AAAGTGTAGT ATCCTAGAAT GCCAAAGTGG GAGGGGAAAT GGGTGATGTA 000400 000401 GCTCATTCTC TTTTCTACCT CTATGGAAGA AAGAAAGAGC CTGTCCCCAT TTTGTGGGGT CCCAGAAAGG GTGATTTTCA 000480 000481 CACTTCACAT TTGGCGTTAG GGCTAGTATT TCACAAACAT TACCGTCTGG AACTTTTGAA GGCTGAGTTA AATGACTTCA 000560 000561 TCTTGTGTAC TTGTAGAACT GCTATTAGAA GGAGGCTGGG GACTCCCTGA TGATGTGAAC CAGCCCTTCT CTTCTCAGTT 000640 000641 TCAGCACTTT GTGATCATAT TTATAAACCT TGGACAGGGC TCCTTGGCCT TAGAGTTAAG TGAAGAGTTA ACACTGTGAC 000720 000721 TTTAGATGCA TTTTTCTCAG TGTAAGTGTC TGAGCTCATC TCCAGTTCTG GACTCGTGCC CCCACTCCCG GGTGCTGACA 000800 000801 GCAAGCTCTG AAGATATGCT GAGAGAGCTC CCTGACTCTC CTGACTCAGG TCTGCCAGTT GATGAAGACA GCACAGTTGT 000880 000881 TACCAAAAAC AAAACCTGGC AGATGGTCCT AGGTCAGGAT TAGTGGTCAT TCTCTGGTCT TCTCCAGACT GGTGACACAG 000960 000961 GGTGGTCTTA AAAGAGTCCT AGTCCAGCCT CTGGCTCCCC GAATTTCCTC TGGTGCATGG GGCATCAGGA AAGGGCAGGG 001040 001041 GAGAAGGAGG GGGAGCAGAA AAATAACTGA GGCTGGGCAG AAGGGTCCCT TCCATTTCCC ATCCATTGCT TCAAACAATG 001120 001121 GGTGATTACC GTGCACCTTG AGTGAATGTC AAGGCAGGAA GGGTTccagg gccacccagt gtggcaggag cagagctggg 001200 001201 atcagaattc tggattcctg actctccgtt cagctgctat tcagctatca ccaagctgcT GAGTTTGTCC TACTTTCTCC 001280 001281 TGGGTCACAT TCTGCTGTTG TTGGGAAACA GGGAGTGAGT GAAGGGAACC TGGGAACCCT TCTCCCCTCA CCTTTTAAGG 001360 001361 ATGTTCTGGG GTGGAATAAA GAGAGGTGGA GGGTGGGGTG CCTGGCCCAG CCTCCCTGGC TCCTGGTCCT TCTTTCTTCA 001440 001441 GCAGGGAGTT CTGGCAAGGC CTGGGCCTGG GGAGGGGGCC TGGGTGCAGT TTTCTCCTGC GGTGTGGTTG GCTCTTTTGT 001520 001521 CTTCCAGGAT GGGCCTGTGG GGTCTGTGTG GGGAAGGAAG GAGCTGGGAG CCTGGGCTGC CTGTGTGTCG GCTGGATGCT 001600 001601 GCCAGGTGGC TCCATCTGGG CCGCATCTCC AGGACTCCTG GCCTGGACTT CTCTTTGGAC CTCGGGTGAC CTTGGATTCT 001680 001681 GGCCACAGTG ACTTAGCGGT CAGACTCCGG TGGTTTTCTA GCCCGCTGGG TGACTCCCTG AAGATCTCAT CCTCTTCACA 001760 001761 CCTGTTGGGA TGGAGCCTCC CATGGATAGG AACTCTTCCT GGTTGATGCT CAGCAGATGA CTGATCTGGC TCTGGAGGAC 001840 001841 AGCTCCAGGG AATGCGGAGT GGTGTGTACt attcatcagc ttgggctgcc acagcaccat gccagactgg atggcttaaa 001920 001921 catcaggaat ttattttctg ccagttctgg aggctggaaa gtccagatca aggtgttaag acttggtttc tggtgaggcc 002000 002001 tctctccttg gcttgcaggt ggcaccttct cactatgtcc tcacatggcc ttttctctgt ggagagggac agagagcatg 002080 002081 agcaggctct ggtgtctcct cctcttctta taaagacact aatatcacca tattagggct taaacctatg acctcattta 002160 002161 accttaaccc cttaaaggtc ccatctccaa aaacagtcac atagcaggct actgcttcaa catatgcatt tgggggaggg 002240 002241 gacaccattc agttcttaac aGGGTGGTCA CCGCAAACAT GGAAAGTCAG AGCCTTCTCC CCTTCAGAAT TCCCGCCCCC 002320 002321 ACCCAGGGAT GGGGAGGAGG AGCAGAGAGG TATGGGAAGC AGACACGGAG AGTGGCAGGT ACCATGCTGG GGTGGCTCAG 002400 002401 GAGTGCTTCG GAGGACATAT GGAACTGGCA GGGCTCAGTG CAGGGAGGCG GAGGCCCTGG GAGAGCCGTG TCCTGAGAAG 002480 002481 GGCCTGGGCT ACAaccctgg gcaagttact tcacctctga gcctccgatg ctctgtgaaa tggaaggaat gtgcttgcct 002560 002561 gtcaggtgca gggagaattc agtgagattg tgtgcctagc acagtgcctg actcccagta ggtgctcagc aaatgCTCCC 002640 002641 ATCCATCTGG GAGTATAGAC TTAGGGTTTA TCTATTTTTT TTTTTTTTTG GCTCTCTGGA CTTTAAAACT CAGCATCTTC 002720 002721 TGAACCAGAG GCATTTCTGA TTAGCCCTTC CCTACCTATT TTCCTAGTAT CACTCTTTAA TCAGCTTGGG GAGGTGGCAG 002800 002801 CATTTCATGG CCTCCGTAGT AACTCACAAT GCTTCCTGGG GTATTTAAAT TCTACTCTCT CATCAGCact gagcacctac 002880 002881 tttgggccct ttcccgtgct agccatttgg gggaaatata ggtgaaGAGT GGCTGGGGTT TGAACCTTTA GGATTTCACA 002960 002961 GCCATGCTGG ATGGGATAAA ACCAGCTCAC ATGGAGAATC AGAGAATGGG ACAGTGCCAC AAAACAGTCT ACTGAGGCAC 003040 003041 AAGTTCTGAG TGCCTGGGAA GTGGTAGAGA GACCCCAGAG AGGGCTGCTG CAGTCTGGAA CAGCTTCCTA GCAAGCTGTA 003120 003121 CCAAACAGGG CCTTGAAGGA TGAGAAAGAT CTGGCTGAGA TGATACCCGA CCCTCTAGGG AAATTCTTAA AGTAACTTCT 003200 003201 AGGAAATGTC ATTGCTCCTT aaaaaaaaaa aaaaaaaaaa aaaaGCAGGT TCTAATTCAA ATTCCGCTGC ACTACTGAAG 003280 003281 tagtgcagga cttatcagaa cctttaaaat gctaatggca atttcaaata ctcagggaca gggcatagga tgaagtgttc 003360 003361 cttgactttt atggccgtag aatctttttc tcatggaaca tcGTTTAGAA CTGTGGGAGA TGCTAGGCTG GGGTTTCTAT 003440 003441 GGGAAAAGTA CAGCAGTGAT AGAAGATGGC ATAATTAGGG TACACTTAGG TGCTTTGTAG CATTGGCTGA AAAGGAAGCA 003520 003521 GACCGGGTGG GCGTGGGGGA GTCTCAACTT GGTTCCAGGA GCCAGGCCAG CTTGATGCGT TTTTTTTTTT TCTAATGGTG 003600 003601 GGAGGGCAGG CCAATAGTTG GAGAAACTAG AGGCCTGACA GTCGGTGATG GAAGAGATGT CTACTAAGCA CGGTTGTCAG 003680 003681 ATCTTTTGCG GAGAGATGCG GGTGTGCGTG TGTCTGTCAG AGTGTAACAG GATCCAGCCC TCTGGGAAGG GGCTGACCAG 003760 003761 AACCAGGCAG GGGGTTTCTG TCTAGGACAA GTAGGGTCCA TTTTCAGGGG AGCTGAAATA TTTGCAGGGG GTGCTCTGAG 003840 003841 ACCCACAGCC AATAAATAGG GAAGCAACAT GCTTTTGGGC AGGGTCCATG TGGTTAGGGT TGATTTTGAT GGGGCTGGGG 003920 003921 GGCTTAGAGT TAGACCCCCT GCCCTGGTCA GGCCCCACTC CCTGGCTGGT GGGGGCGGGA GGCCTCTGAA GCTGCAGCTG 004000 004001 GAGGGGCCGG GGCAGTGTTG CATGGTGTGA TTAACCTACT AACCCAGGGC TCAGCCGGGA CGCTGTGGCG TGTGACGAGG 004080 004081 TGCCTGGCCT TCTGCCAACC AACTAACCCA CTAACCAGGC CCGAGCATGC CCTACTAACC ACCCCCCCGC AGCCAGATCC 004160 004161 TACTAACTGT GCAGCTCATG GGCCTTTCAA GGGGCTGGGA TATGGGGGCA GCCAAGGCTC CAGAAGGCTC TGCCTATGGG 004240 004241 CTGGGATCTT TGTGCAGACC CACGTTCCAG GACAGAGAAT GCAAATAAGA CTCACCAAct ctgccacttc ctgttgagtg 004320 004321 agtttgagta agtcacctca cttctctcaa cctcagtttc ctcagtggta gaatgcgagt tctgatacct tacaggttgc 004400 004401 agtgaggatt CCCGTCAATA TAAGGGTCTC AGCACATGGC AGACACCTAA AAAAAAAAAA AGTATGAGGA TGGAGGAAGG 004480 004481 CCCCTCAAAC CTGGTTGAAC ACGTCTGCTG CCTAGGCCCT GGCCTCTCTG GGTGTTCTGC ACACAGATCC TTCTGCCTGG 004560 004561 GGCAAGACAC TTGGCTTTGA ATCCATGTCA CTTCCCCACA TTCTTCCTCC GTCTCAGCTT TCTTTTCTGT AGGCAGCTCT 004640 004641 TTTGTTCGAT TACTAACCCG TCTAACCCCT GGGGTGCCTC AACTGCACCC CGATCATCCC TTAACAAACT AACGGACCTG 004720 004721 CGTGCGTTCT TCCTTTTCTC TTAGCGACTC CTGTGTGTGT CTGCTGAGGT GCCCTGTCCG CTGGTGCTGT GCTCTGACTT 004800 004801 ACTAACCCAG CCCCTACTAA CCCTGTTTTC TCTTCTTACT AACCCCAGCC CTGCCGAGCT CTGGGCTCCC CCCGGGGGCT 004880 004881 GGTCCCCCTC CTTTTGGCAA GCAGATGACC TGGGGCTACT GGCCCTGTAG ACAGATGTCC CACTTTGCTG CCCCATATTG 004960 004961 GCTGTAAGAT CAGAGTCCAC TGGGCCAGGT CTAAGGCAGG GGATGGCCCT ATTAACAAGA CTCAGAGGAG GAAGAGGTGG 005040 005041 TCCTGTGGAT GTGGGAGGCT GGACTCTGAG TATGACATCT CTCCTATGTG CAGAAGTCTG GTTGCCACTG GGAGTAGGTG 005120 005121 GGACCAGGGA AATCTCTGGG ACGTGAGTGT GGAGGCCTGT TGGTCTAGAC TCTAGACTGT GGAGCTCTGA GCTTTTGTGT 005200 005201 CCTCTGGAAG GAAGCTGGGG AAGAATCCTC TCCATTGTTA AGTGACGGGG ATAGAAGCTG TCCTGCACAG GAAGTCACGA 005280 005281 GGGGGGCGTA TCCCACGAGG AAGGCAGGAG GGGGCGTGCC CCTCACCGGA AATTAGCAGA GGGGCGTGTC CCACACCGGA 005360 005361 AGTCAGAAAG CGGAGCCTTT CTTACACCGG AAGTCAATGA AGCGGGTCTT TCCTACGCTA AAAACCACTG AGTGGAGTAT 005440 005441 TTAGTACACA GGAAGTCGGC CAGAGAAACA TTTCTCATAT TTGAAGGCCG GAAAGAGGGA CATTTCTGAC ACCGGAAGTC 005520 005521 AGTGAGAGGA CTCTTTCCCA CACAGGAAGT CAGCTAGAGA GCCGTCTCCC CTCTCTGGAG CCGAGAGAGG CCGGTTTCCC 005600 005601 CCACCGTAAG TAGACGTGGG GCCGTGACCG GAAGTCCTTG GGAAAGATCC GTCCCATTCC CGGAAGCTAG AGGGCGTTAG 005680 005681 TTGTCGGGTT GAAAAGGGGT GTGGGGAGGG GAAGCAGCTT TACCCCGGGC TCGGAGTTTG CAGGAGAGAG AAGTGGGGAG 005760 005761 CAAGAAGTGA ACCTCAGGGG CTCACAGGGT TCCCGCAGAT GCTCAGGCCG GCCAGGAATG CATCTCTGGC TCTCTGTTCC 005840 005841 CACGGACGTC ACTGCCTCAG CCAGCCTCCC CCAGAGCCCG CCAGCCGCTA AGCCGGGGCC ACACCTGGGG GTGATTTCAT 005920 005921 GCCTCACCTC CAGTAGGCAC CTTGGTTTCT TTGGGCTAAT CTCTGGCTCC CTTGCGCTAA CTCTTGCTCT CACCCAGCTA 006000 006001 ATCCCTGCCT CACCCTGACT GCCCCAGGGG CTGACCACTA ACAACCAACC TGGCCCTGTC TGGGGGTTCC AGGCTCCTGG 006080 006081 CCTGGCCCTG ACCGGTTCTT AATTAACCTT TCCTTCACCT TGACTAACTC CTGCCTTCCT GGTCTGTTCC TTTCAGCAGA 006160 006161 AACTAATGGT TTGTGGATTT TTTTCTGACT AACAACAGGT CTAACATTCC TCGTTACTGT TAACAGCTTG GATGTCGGCA 006240 006241 TGGCTGGGAA GGGGCTAACA CAGCTTTGAA CTTGGCTAAC ACAGGTTTGA ACTTGGCTAA CACAGGTTTG AACTTGACTA 006320 006321 ACACAGGGAA AAGCATAGCT AACAATTTTG GGCGTGGTGG CTGCTCTGAG TCAGAACAAT CAGAAGTCGG TAAAGATGGT 006400 006401 AGTTTTCTAA AGGAGGTGCC AGGGCTCTGG TGTGGACCAG GCCTGATGGA GCAGTGGTAC CCACCAAGGT GGGGTCAGAA 006480 006481 GTATAGCCAG TCTTGCAAGG TTTTGGCCAT TGGGCATATC TTCACTCCTC ATAGTCTGCA TTTGGTTTCA GTTCTTAAAA 006560 006561 AAATATAGCC TTATAGCTAC AGTAGTTTGC ACAAGTAGAT GCAGCTCTTA TAAACCTTAA AATACCTGTC TGGTGTCTAC 006640 006641 AGAGCATATG CCATTTTGTA TAGAGTCACC CTTCCCCAGG CCAGGGCCTA GAGTCTTCAT TTTGGGGACT TTGTGTTTTG 006720 006721 GAAGTTCTAG GACATAAAGC TTTAGATCAG AGTATTCAGA AGGGTTATAA CTCCGTCAGT CATTTACATG TTAGTAGTAT 006800 006801 AAATTATCTG AGCTTCCTGT TCTAACTTTT AGCTCTTCTA GCATAAACTC TTCTGTGCAA TTTAGCTGCA CCGAGGAAAC 006880 006881 GGGAGTTTTT CTGGAAGGGA CTTTTGATCT CTTTAGACTG AGGGAACGTC CTTTGGGAGT AGAGGGGCAG GGAGCATACG 006960 006961 CAAGGGATTC CAGGTGCAGG TAAAAGGTGG CACTAGTTCA AGGTTTTGCT GACTCAGTCT GGTAGTCAGA GTCTGCAGGA 007040 007041 GAAGACAGTT CAAGGCAGGG CCTGGAGGAT TGGATCAGTT TAGGGACAGG TCAAAGGCTG GCTTACAGAC CTTAGAGGCA 007120 007121 GGTTGCTTGG GTCGTTGAAT GCTAGTCTGG TGCTGAGAGC CCTTTTCTCT GGCAACTGTG GACTCAGAGC TAACCAATTG 007200 007201 TAGTTGGCAG TGGGGGTGAA GGGTGATCCA GAGGCCTGAG CTGCAGAGGG CACAAGAGAG AAAAGATGTC TTAGAAAGAG 007280 007281 CTTTGAGAAC ATGCCTTGGC TGCTGGCAGG GACCTTGGAT GGGGTAGTCT ACACCCGGAA GTGCCTGCCT GCCATCCTCT 007360 007361 AGTGGCTGCC TTGCTCCATT TCACTCAAAG CAGGAAGCTC ACACCTCCTA TTCCTGAAAC TCCTCTTTGT TTAACTGCAA 007440 007441 AGACTTGATG Ctgctaagga tctactatgt gccaggcact gctctgggcg ctgggacctg cacctgggct ttttcgtcat 007520 007521 ggtgctttta tagcctagtg ggagagttgg tgaagtagat agtgattcag tgagatgggt gttatgattg gtcaggggtc 007600 007601 tgtgggagCA CCAAGGAGAC AGACaagatt gatgtgcacc tactctgtgc caggcgtgtg ccaggcattg gggatgtagt 007680 007681 ggtagttaaa caccatttgg tcttcaggag ctttaattct agtgtgttgg gtgcaggggg gtggaatggg gacagagaga 007760 007761 cacctaatcc accctgtggt ggctttctgg agagggaggc atctaagctg agctgtggct gggtggagtg tgggtgggga 007840 007841 tgagttccgg gcagcgagaG TGGTGGACAC CAGTTTCTGG GGATCAGAGA GGATCCAAAG AGGTTCTGGA AGGTTCATGT 007920 007921 GGAATGTAGC AAGAGATAGG AGACATGGAC ATGGTGCCGG GTCTGGTTGC CAAGAAGTTT AGATTTTATC CTTAGGCCTT 008000 008001 GGGGAGCGAC GGATATGATC TGAGAAAGGG AGTTAGTGGA TTTGAGTTTT AGGCTGGCCA TTTGGCTTTT CCAGCCCAGG 008080 008081 TGGAACTCAG AGGAGTTTGC AATGGCCTCT GGCCACATTT TAGACAACTG AGCAGAACTT TTTGAAACTA GGAAGACCCT 008160 008161 TTGGTCCATC TTTTGATAAA CAGAATCCAT ACATGTCTAC CCCAGTTGGA AGTATCTCTG CAATGACTGg aaagtaaaga 008240 008241 ggaccaaggt gaaaataaag gctcggaagg ggagcaatct tgaaaacatg tcatcccatg gtggtgggaa gtccctggag 008320 008321 aagatcaggg gaaacacagt cataggctgc aagtctataa gataattcca ttggggaggg agcccatttg tcatgcatgg 008400 008401 ctgcaagggg cagatacaag tgtggagtaa gcttGCAAGA GCTGATCCTG GTCCCAGAGA GGGAAAAATA TGCCTTGGTG 008480 008481 GGTAATGAAC CTTTTGTTCC CAGAGGCAGA AGGATTGGGA CTAGGCCAAC ATAGAGATTG GCGATGGTTG TGAGATTCTA 008560 008561 AGAGTGTGTG TGCATCTTGA CAATATTAGA GGAGGCTGAG CCCAAGCAGG CACATTCTCT TCGACCCCTC CCTCATTCAG 008640 008641 TCTGCTTTGG AGTCTACTGA ACATCAAGCT TGCTATGAGC AGGATCTTAG AGCTGAGGAA TTGGCCTCCC AATCCGAACA 008720 008721 GGTGTTATAA TCCTTTCTTA ATAGGTTGTG CTGTGGACCC AATGTGAGGG CTGTGCTGGT GTAAATGGTG ACATGTTGAG 008800 008801 CTGGGGGGAT GCTTTCGGGG TGGGGGGACT GGTTCCATTC CATCAAAGGC CCTCTTGAGA GTCTATCCAG GGACCCATTG 008880 008881 TTTTACTTTA ACAGACCAGA AAAGATGTTT GTTTTCCATG TCATTACCCC CAGGGGATAC CGAATGTGTG GGTAGAAATT 008960 008961 TCTCTGTAGA TTAAAAATCA GATTTTTACA TGGATTCAAC AAAGGAGCGT CACTTGGATT TTTGTTTTCA TCCATGAATG 009040 009041 TAGCTGCTTC TGTGTAAAAT GCCATTTTGC TATTAAAAAT CAATTCACGC T |
Predicted Small Protein
Name | NONHSAT084519_smProtein_2351:2584 |
Length | 78 |
Molecular weight | 8266.3394 |
Aromaticity | 0.0649350649351 |
Instability index | 41.4077922078 |
Isoelectric point | 8.89630126953 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0490671667143 |
Amino acid sequence | MGSRHGEWQVPCWGGSGVLRRTYGTGRAQCREAEALGEPCPEKGLGYNPGQVTSPLSLRC SVKWKECACLSGAGRIQ |
Secondary structure | LLLLLLLEEEELLLLLEEEEELLLLLLHHHHHHHHLLLLLLLLLLLLLLLEELLLLEEEE EEEEEEEEEELLLLEEL |
PRMN | - |
PiMo | - |