NONHSAT084854
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084854 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2988 nt |
Genomic location |
chr22+:31556138..31603005 |
Exon number |
6 |
Exons |
31556138..31556289,31588670..31588688,31591455..31591567,31592922..31592976,31597484..31597601,31600475..31603005 |
Genome context |
|
Sequence |
000001 AAGTCCCTCC GAGAGGGGCG GCTCCGCGTC ATGTGACTGG AGTCCGCGTA GGAGGGGTCG GAGGTCTTAC CCAACAGATT 000080
000081 GACGCGGCGT TAGTATTGGC CGTGTACCCG AAAAACTGAT TGACTGGGCT GGCGTTAACT GTGCGGAGGC AGTTGGCCGT 000160 000161 GTTTACATCA GTGGTTGGAG ACCAGACCTA ACAGACAGGT GTGTCCTGTT TGCAAAGCTG GCATCAGCCG AGACAAGGTC 000240 000241 ATCCCCCTCT ATGGAAGGGG CAGCACTGGG CAACAGGACC CCAGAGAGAA GACCCCTCCT CGTCCTCAAG GACAGAGGCC 000320 000321 AGAGCCGGAG AATAGAGGGG GATTTCAAGG ATTTGGATTT GGAGATGGTG GCTTCCAGAT GTCTTTTGGA ATTGGGGCAT 000400 000401 TTCCCTTTGG GATATTTGCC ACAGCATTTA ATATAAATGA TGGGCGGCCT CCTCCAGCTG TCCCTGGGAC ACCCCAGTAT 000480 000481 GTGGACGAGC AGTTCCTGTC ACGCCTCTTC CTATTTGTGG CCCTGGTGAT CATGTTCTGG CTCCTGATTG CCTAATGCTG 000560 000561 GGCTCCTGCC TACATCCGTG GCAGGGCTCT GGACTGGTGA CGTGCCACCC CAACTCCTGG TGTTTGGCTT CCTGGCTAAT 000640 000641 CTTGACTCCT GGAATCAGTG GGATCAGTAA CACATCAAGG AGTCTTGTTT CTTCATCAGA GCTTTGGAAC TCGAGACCAG 000720 000721 TTGGCGATGA CCCCTGAATA TCGCCACCGC TGTAAACACT CTATAACTTC AGGCCTTGGC ATTGAGTCAT CTCTCATGGG 000800 000801 TGACACCATG AAATCTTGTT TCAGCCAGTT CTGCAGGTCC TGACTCTGCA GAGGGAAGAG GCAGAAAGAG AGAAACTGTC 000880 000881 AGAGTATAAT TTCACCTGAG TTTAATATTA CAGAAACAAA GGGATGCACC AAATGGTATT TCTGGAAATT TTCATGTCTT 000960 000961 TAAATACCCC TTGGTAAGTT GCTTCTGAAG CCAGTGGGGG CTCCTCAGAT AGAGAGGTTC CCCTTTCAAA TCCCAGTGCC 001040 001041 GCTCTGTTCT CTTTCCTTCC CCTCCCACTC CCCCTCTTCT TCCTCTGTAG AGATGCAAGA AATTGCTGTC CCATAAAAAT 001120 001121 CATAATTGCA GTAGCTAAAG CTGGGGTCAC TTCGTGAATT CACCAGAGAC TCAAAGATCT TTTATTGGCT CTGGGCTGTG 001200 001201 CTCAGTGTCT TTGGCCTCAG AGAACAACTT GAATGACTTC CTGGTTTCCT GGCATAAATT ATTCCTGGTG AGACATGTGG 001280 001281 CTTAACTCAC AGGTTTCCCA TCAGCTTTCT CCCTAAAACT ATGTTCATCT GCCTCTCTCT GCCAGAGAAC ATACAGCCGA 001360 001361 GAATACTGCC GAAGCTGAGA CTGACTACTG TGCATTAGGA AAGACCTGGA GTCAGGACTT TGGTGGGATT TGGAGCTCCG 001440 001441 AGGCAGTAAT AACTGAACAA GCAGCCCTGT CCCCTAGGCT GCAGAAGCTT GAATGCATCC TCTCCCAGAA CCTGCCACAG 001520 001521 GAAACTGGGG GCTTTGTCAG GTCAGCCCAA CTGCATGCAA AAGACCACCA TCCTCAGAAG CCAAGTTGTC TTTTATGAAG 001600 001601 AGGCAAGGAA AGGGGAAACC CACATGTGAC CCTGATTTTG GTATGGCTTG ATAGAGTTCC CTGAAAACTC CTTGTATGTG 001680 001681 TGCTAAAACC AGGGAAGCAT GTGACTGCCA AGCAGGCAAC CCCTGATGAT TTGTAAAGCC AGGTGGCAGG GCCTTGGGGA 001760 001761 GCCCCAGCAC AATGATATTG TGTGGTCTTC CCTCCTGTGG AATCGAGGGG AAATTATTCT TCCCAATACC TTGATTTGAT 001840 001841 TTTCAGTTTC ATAAGCTTCT TCCTCTGAAT CTTATTGAGG GACTATGGTA CCAAGCAGGT AGGACTGTTC ACCTGGTGGA 001920 001921 ACAGTTCTTG CTCTGCCTTC TAGGCTTCAT CCCAGAAATC CAGCCTCTTT CTGGAGACCC CAAAGCTGGA GGGAGATGGG 002000 002001 CTTTCCTCTG GGCCTCTCTC CTACTTTGCC ATCCACACTG CTCCTGGCTA ACCCCAGCAA TAACCAACAA ATGGTAGGAA 002080 002081 GCCCCATCTA TTGCTTTTTC TCAATTATGA CTGCATAGTT TATGGAAACA AAGATCTTGA GGAAGATGAG GGAAGCCCTC 002160 002161 CCCTCTTCAC AGTCCCCATC TCTTCTCCTT TGTACCTGTC AACACCAGAG TTCAGTGTTT AAACAGACAA AATATAAAGT 002240 002241 ATTGAGTAGG TGGTTCATAT GCCGAATCCA CTTGGTAGGA AGAAACCACC AGCTTTATAG TGTGCCTGAT AGATTTTAAA 002320 002321 CATTCCTGGG CACCCACTCA AGAGTGCTCT TTTTATCACC TTCTGGAAAT CCGCAAAGTT GCAGGGGCCT CTGGAGTGTC 002400 002401 TCTTCTCTAG AGAGAATTGG TGGGACCCCC CTCAGTGCAG TGGCCCCAAC TAGTGGAGGG AGAGAGGACT TAAGTCAGAT 002480 002481 GGACTCAACA GAAATGGGTT TCCAGAAGAA TAATGAAAAG TTGTGGGTAG GAAAATGAAT CATTTGGACT CTTCAATGAA 002560 002561 ATGGAGTGAG CCCAGGAGAG CTCAGCCAAC AGAGGCACTC TGGGAACCTG TTAGTAAAGC CAGGCTGGCC AAATGCCATT 002640 002641 TGATTTTGAA CCTCGTAGGT CCCCACTCAC CCTCTGCCAG GAGCTAAGTA AGGCAGGAGA GCTGACTTGG GACTCCTGGC 002720 002721 TCGGCCCCAA CAGGGAGCCC CCTTCCCACC ATCCCTCGGC AAGCTCACCA CCTCATCCTT CTGCCAAGGC AGCTTTCCTT 002800 002801 TCTTTTGTGT GTTTTCTGTG TTCTTAGCCT CCACCCTCCT CCTGCCACCC TTGTGGACTA GGACCAGGTC CTGACCCCAG 002880 002881 TCAGAAAATG ATGATATGTA CAGTGGCACA CCTTAACCAG TCACTAATTT TCACTGTTGT GAAAGTGATT TGATTTAGAA 002960 002961 TTAAACAAAT GGTTTTACAT TACTATGA |
Predicted Small Protein
Name | NONHSAT084854_smProtein_554:736 |
Length | 61 |
Molecular weight | 6409.183 |
Aromaticity | 0.0666666666667 |
Instability index | 59.6683333333 |
Isoelectric point | 5.95648193359 |
Runs | 12 |
Runs residual | 0.0502659574468 |
Runs probability | 0.0467599952894 |
Amino acid sequence | MLGSCLHPWQGSGLVTCHPNSWCLASWLILTPGISGISNTSRSLVSSSELWNSRPVGDDP |
Secondary structure | LLLLLLLLLLLLLEEEELLLLHHHHHEEEELLLLEEEELLLEEEEELLEEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii |