NONHSAT090542
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090542 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2618 nt |
Genomic location |
chr3+:75687750..75696049 |
Exon number |
3 |
Exons |
75687750..75688507,75691156..75691895,75694930..75696049 |
Genome context |
|
Sequence |
000001 catgtccttt gcagggacct gagtgaagct ggaaaccatt atcctcagca aactaacaca ggaacaggaa accaaacacc 000080
000081 atatgttctc actcatatgt gggagttgaa caatgagaac acatgtacac cggaaggaaa catcacacac cggggcctgt 000160 000161 tagggggttg gggtcaaggg gagggagagc attaggacaa atatctaatg catgtggggc ttaaaaccta gatggcaggt 000240 000241 tgataggtgc agaaaaccac catggtacat gtaaacctat gtaacaaacc tgcacgttct gcacatgtat cccaaaactt 000320 000321 aaagtaaaac aaagaaacaa aCAAAAATGC ACTAACGCTC AGGGTGAGTG GGGTAGGGGC CGGGGTGGGG CGCGGGTGGG 000400 000401 TGGGTCCTGG TGTTTTATTC AATCAGTGGC GCTGGTGTGG GAACCACCCA ATCAGGCACA CAGTTTGAGA AGAGAGGAGG 000480 000481 GTGTGGCTTC CGGCGTTTGG TGGGGCCTTT GTCTCTCGCT GGTGCTGGTG CAGGAGCTTG AGATCCATCT CCTTTTTTAC 000560 000561 CTCCTCCACC TTGGGAAATC CAGACAACTC CCTCACAGCC CCTGTTGCCC TGTGATCTGT AGGTCCTTGG GGACGCATAG 000640 000641 TTAAGGTGCt gttaccatgg ggcggtcctt gctcccagag ctcccaagat ggtggcaggc cacttcctta attttggcag 000720 000721 accatttcca agatggtggc aagcctcctg ttctctgaCT GTGGCTTCCT GGAAAGGTCA CTTTCAATGG CGCCTTTTTC 000800 000801 ACGAATGTGA AAGTCTAGGC ATCAGAAAGG TTAATTATTG GGTTGCATAA AATCTGCTAA GAGCAAAGGA AAAACCCCAT 000880 000881 TTCCGAGGCG TGAGTCTTGT GAGCCATTTT CATCAACCCA TTTAAGTGGA CCAGCTCCAA AATGCAACCT GAAGCTACTA 000960 000961 TTTAGGCATT TTACACTTGA AATCATTGGT CTCATCTCAA GTCAGGCCTG GCTTGCCAGT GGCTCAGAGC CACAAATGGG 001040 001041 ACCTGATACC TCAGGAACAG ATAGTGTTCC AGCTTTACGG GAGCAACTTT TAAGATGTGG AGCACTTGGG GTCATTTGAA 001120 001121 ACCCgctatc ttcagtaggg acttttactt ctacagagca tgtgcatttt gattttatct gtcctcaagc tgacctttgt 001200 001201 tcattttaat agtaaaaaac acattcctgg gtggagattt aagatgctag tgaggcatgc aatgtatgca caaatatgta 001280 001281 cagctactgc acatgtgtac ccagaagacc agtcagaaca tgcttactat aacacttctt tccaccttct tatgaaataa 001360 001361 tcatgcaaaa ctcccataaa gagggtttct ccagcaataa ttaatgctgt ctcactttta tgagcaggct gccctggaat 001440 001441 ctctttctca gactgtaccg tctattctgc acttaatttt caaaatattc tcttttttga ggaaggccta tttgcagttg 001520 001521 agataagagg aaggcatctg tctcctgctc atccttgggc aatggaatat ctcgctgtaa aacccgattg tatgttctat 001600 001601 ttactgagat aggagaaaac tgccttaggg ctggagttga gacatgctgg tggcaatact gtttttaatg gatggagatg 001680 001681 tttgtataca tgcacatcaa ggcacagcaa cttttctaac cttgtttatg acacagagac atttgttcac atgttttcct 001760 001761 gctgaccctc tccccactat taccctattg tcctgccaca tccccctctc aaagatggta gaaatagtga tcaataaata 001840 001841 ctgagggaac tcagaccagc gccagcgttg gtcctctgta tgctgagcgc cagtcccctg ggctcacttt tctttctcta 001920 001921 tactttgtct ctgtgtctct ttcttttctc agtctctcat tccacctgat gagaaacacc cacaggtgtg gaggggcagg 002000 002001 ccaccccttc attgaaactg tggtaactgt acagccaaga caatgagcct tagcattcac attgtaattc ggctcattca 002080 002081 agcaaagcta tcttcattaa ggactttctg ttccagagag catgtgcatt ttgattttac ctgtcctcaa acttaacttt 002160 002161 tgcttatttt aatagcaaaa gatacacccc ccagctgggc acggtggctc acacctgtac tcccagcact ttgggaggct 002240 002241 gagaagaatg gatcacttga aaccagaagc tcaagactag actggtcaac atagtgaaac cccatttcaa ctaaaaatac 002320 002321 aaaaattagc caggtatggt ggtgcatgcc tgtaatccca gctactcagg aggctgagca cgagaatggc ttgaacttgg 002400 002401 gagggagagg ttgcagtgag cagagattgc accaccacac tccagcctgg gcaacagagc gagactctgt ctcaagcaaa 002480 002481 caaacaaaaa tacactcctg gctagaggtc taagatgcta atgagacatg caaaatatga ataagcatgt acagctactg 002560 002561 cacatgtgca cccagaagac cactcagaac aggcttacta gcagctcctc ttcccccc |
Predicted Small Protein
Name | NONHSAT090542_smProtein_1643:1843 |
Length | 67 |
Molecular weight | 7432.8974 |
Aromaticity | 0.0909090909091 |
Instability index | 49.0 |
Isoelectric point | 6.36480712891 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0659938012879 |
Amino acid sequence | MLVAILFLMDGDVCIHAHQGTATFLTLFMTQRHLFTCFPADPLPTITLLSCHIPLSKMVE IVINKY |
Secondary structure | LEEEEEEEELLLEEEELLLHHHHHHHHHHHHHHHHHLLLLLLLLLEEEEELLLLLLLEEE EEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT iiiiii |